Mycobacteriophages are viruses that infect mycobacterial hosts such as Mycobacterium smegmatis and Mycobacterium tuberculosis. All mycobacteriophages characterized to date are dsDNA tailed phages, and have either siphoviral or myoviral morphotypes. However, their genetic diversity is considerable, and although sixty-two genomes have been sequenced and comparatively analyzed, these likely represent only a small portion of the diversity of the mycobacteriophage population at large. Here we report the isolation, sequencing and comparative genomic analysis of 18 new mycobacteriophages isolated from geographically distinct locations within the United States. Although no clear correlation between location and genome type can be discerned, these genomes expand our knowledge of mycobacteriophage diversity and enhance our understanding of the roles of mobile elements in viral evolution. Expansion of the number of mycobacteriophages grouped within Cluster A provides insights into the basis of immune specificity in these temperate phages, and we also describe a novel example of apparent immunity theft. The isolation and genomic analysis of bacteriophages by freshman college students provides an example of an authentic research experience for novice scientists.
Intensification of the global hydrological cycle, ranging from larger individual precipitation events to more extreme multi-year droughts, has the potential to cause widespread alterations in ecosystem structure and function. With evidence that the incidence of extreme precipitation years (defined statistically from historical precipitation records) is increasing, there is a clear need to identify ecosystems that are most vulnerable to these changes and understand why some ecosystems are more sensitive to extremes than others. To date, opportunistic studies of naturally occurring extreme precipitation years, combined with results from a relatively small number of experiments, have provided limited mechanistic understanding of differences in ecosystem sensitivity suggesting that new approaches are needed. Coordinated distributed experiments (CDEs) arrayed across multiple ecosystem types and focused on water can enhance our understanding of differential ecosystem sensitivity to precipitation extremes, but there are many design challenges to overcome (e.g., cost, comparability, standardization). Here we evaluate contemporary experimental approaches for manipulating precipitation under field conditions to inform the design of "Drought-Net", a relatively low cost CDE that simulates extreme precipitation years. A common method for imposing both dry and wet years is to alter each ambient precipitation event. We endorse this approach for imposing extreme precipitation years because it simultaneously alters other precipitation characteristics (i.e., event size) consistent with natural precipitation patterns. However, we do not advocate applying identical treatment levels at all sites -a common approach to standardization in CDEs. This is because precipitation variability varies >5-fold globally resulting in a wide range of ecosystemspecific thresholds for defining extreme precipitation years. For CDEs focused on Accepted ArticleThis article is protected by copyright. All rights reserved. precipitation extremes, treatments should be based on each site's past climatic characteristics. This approach, though not often used by ecologists, allows ecological responses to be directly compared across disparate ecosystems and climates, facilitating process-level understanding of ecosystem sensitivity to precipitation extremes.
Drought has long been a phenomenon of interest to ecologists, with research articles that include "drought" in their title dating back at least to the 1920s (Gorham & Kelly, 2018). For many biomes, understanding the dynamics of ecosystem structure and function requires knowledge of their response to periodic droughts (Smith, 2011; Vicente-Serrano et al., 2013). Moreover, extreme drought has been associated with regional-scale forest mortality and global carbon cycle anomalies (
Plant traits can be used to predict ecosystem responses to environmental change using a response–effect trait framework. To do this, appropriate traits must be identified that explain a species' influence on ecosystem function (“effect traits”) and the response of those species to environmental change (“response traits”). Response traits are often identified and measured along gradients in plant resources, such as water availability; however, precipitation explains very little variation in most plant traits globally. Given the strong relationship between plant traits and ecosystem functions, such as net primary productivity (NPP), and between NPP and precipitation, the lack of correlation between precipitation and plant traits is surprising. We address this issue through a systematic review of >500 published studies that describe plant trait responses to altered water availability. The overarching goal of this review was to identify potential causes for the weak relationship between commonly measured plant traits and water availability so that we may identify more appropriate “response traits.” We attribute weak trait–precipitation relationships to an improper selection of traits (e.g., nonhydraulic traits) and a lack of trait‐based approaches that adjust for trait variation within communities (only 4% of studies measure community‐weighted traits). We then highlight the mechanistic value of hydraulic traits as more appropriate “response traits” with regard to precipitation, which should be included in future community‐scale trait surveys. Trait‐based ecology has the potential to improve predictions of ecosystem responses to predicted changes in precipitation; however, this predictive power depends heavily on the identification of reliable response and effect traits. To this end, trait surveys could be improved by a selection of traits that reflect physiological functions directly related to water availability with traits weighted by species relative abundance. A http://onlinelibrary.wiley.com/doi/10.1111/1365-2435.13135/suppinfo is available for this article.
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