The San Pedro River in the southwestern United States retains a natural flood regime and has several reaches with perennial stream flow and shallow ground water. However, much of the river flows intermittently. Urbanization-linked declines in regional ground-water levels have raised concerns over the future status of the riverine ecosystem in some parts of the river, while restoration-linked decreases in agricultural ground-water pumping are expected to increase stream flows in other parts. This study describes the response of the streamside herbaceous vegetation to changes in stream flow permanence. During the early summer dry season, streamside herbaceous cover and species richness declined continuously across spatial gradients of flow permanence, and composition shifted from hydric to mesic species at sites with more intermittent flow. Hydrologic threshold values were evident for one plant functional group: Schoenoplectus acutus, Juncus torreyi, and other hydric riparian plants declined sharply in cover with loss of perennial stream flow. In contrast, cover of mesic riparian perennials (including Cynodon dactylon, an introduced species) increased at sites with intermittent flow. Patterns of hydric and mesic riparian annuals varied by season: in the early summer dry season their cover declined continuously as flow became more intermittent, while in the late summer wet season their cover increased as the flow became more intermittent. Periodic drought at the intermittent sites may increase opportunities for establishment of these annuals during the monsoonal flood season. During the late summer flood season, stream flow was present at most sites, and fewer vegetation traits were correlated with flow permanence; cover and richness were correlated with other environmental factors including site elevation and substrate nitrate level and particle size. Although perennial-flow and intermittent-flow sites support different streamside plant communities, all of the plant functional groups are abundant at perennial-flow sites when viewing the ecosystem at broader spatial and temporal scales: mesic riparian perennials are common in the floodplain zone adjacent to the river channel and late-summer hydric and mesic annuals are periodically abundant after large floods.

The stable isotopes of the conservative element boron, 11 B and 10 B, have been employed as co‐migrating isotopic tracers to trace potential sources of nitrate observed in ground water pumped from a large capacity 0.167 m 3/s irrigation well in the Avra Valley of southeastern Arizona. The isotopic ratios provided an identifying signature for two nitrogen carrying source waters: municipal waste water and agricultural return flow. Additional chemical parameters were also examined to corroborate the isotopic indications. Boron isotopes provided a superior delineation of mixing processes in the system compared to the general inorganic chemical parameters. Findings of this investigation indicate that the water pumped by the study well at the beginning of the 1993 irrigation season was composed of a mixture of approximately 25 % municipal waste water and 75 % background ground water. As the irrigation season progressed, an increasing proportion of water was contributed by irrigation return flow from neighboring agricultural fields.

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In the context of ground-water resources, "capture" or "streamflow depletion" refers to withdrawal-induced changes in inflow to or outflow from an aquifer. These concepts are helpful in understanding the effects of long-term development of ground-water resources. For the Upper San Pedro Basin in Arizona, USA and Sonora, Mexico, a recently developed ground-water flow model is available to help quantify capture of water from the river and riparian system. A common method of analysis is to compute curves of capture and aquifer-storage change for a range of time at select points of interest. This study, however, presents results of a method to show spatial distributions of total change in inflow and outflow from withdrawal or injection for select times of interest. The mapped areal distributions show the effect of a single well in terms of the ratio of the change in boundary flow rate to rate of withdrawal or injection by the well. To the extent that the system responds linearly to ground-water withdrawal or injection, fractional responses in the mapped distributions can be used to quantify response for any withdrawal or injection rate. Capture distributions calculated using the Upper San Pedro model include response to (1) withdrawal in the lower basin-fill aquifer for times of 10 and 50 years following the initiation of pumping from predevelopment conditions and (2) artificial recharge to the water table in the area underlain by the lower basin-fill aquifer after 10 and 50 years. The mapped distributions show that response to withdrawals and injections is greatest near the river/riparian system. Presence of clay layers in the vertical interval between withdrawal locations and the river/riparian system, however, can delay the response.

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