The cellular organization of the cortex is of fundamental importance for elucidating the structural principles that underlie its functions. It has been suggested that reconstructing the structure and synaptic wiring of the elementary functional building block of mammalian cortices, the cortical column, might suffice to reverse engineer and simulate the functions of entire cortices. In the vibrissal area of rodent somatosensory cortex, whisker-related "barrel" columns have been referred to as potential cytoarchitectonic equivalents of functional cortical columns. Here, we investigated the structural stereotypy of cortical barrel columns by measuring the 3D neuronal composition of the entire vibrissal area in rat somatosensory cortex and thalamus. We found that the number of neurons per cortical barrel column and thalamic "barreloid" varied substantially within individual animals, increasing by ∼2.5-fold from dorsal to ventral whiskers. As a result, the ratio between whisker-specific thalamic and cortical neurons was remarkably constant. Thus, we hypothesize that the cellular architecture of sensory cortices reflects the degree of similarity in sensory input and not columnar and/or cortical uniformity principles.T wo major concepts of cortical neuronal organization have been proposed. Structurally, correlations between stereologybased measurements (1) of neuron density and cortical thickness resulted in the hypothesis of structural uniformity, arguing that the number of neurons beneath a square millimeter of cortical surface is constant and independent of cortical area and species (2, 3). Functionally, cortex is organized in a columnar fashion, reflecting similar neuronal activity along the vertical cortex axis in response to peripheral stimuli (4-8). Similar spatial extents of functional cortical columns in the horizontal plane, combined with the idea of cortical uniformity, resulted in the notion that a stereotypic columnar network may also represent the elementary structural building block of sensory cortices (9). In combination, the two concepts thus suggested a common organization of all sensory cortices, which led to reverse engineering and simulation efforts that build up large-scale network models of repeatedly occurring identical cortical circuits (10, 11).The ideal model system for investigating columnar structure and function is the vibrissal area of rodent somatosensory cortex. There, "barrels" of neurons in layer 4 (L4) have been identified as somatotopically organized structural correlates of peripheral receptor organs (i.e., facial whiskers). Whisker/barrel columns have thus been regarded as both structural and functional elementary cortical units (12)(13)(14). To investigate the structural stereotypy of cortical barrel columns, independent of the drawbacks associated with stereology (i.e., extrapolations from small sampling regions), we decided to locate each excitatory and inhibitory neuron soma within the entire volume of interest. Using high-resolution, large-scale confocal microscopy (15) and a...

Highlights d Simulations predict in vivo responses for major output cell type of the neocortex d Simulations reveal strategy how to test the origins of cortical output empirically d Manipulations confirm that deep-layer corticocortical neurons gate cortical output d Gating of cortical output originates from deep-layer thalamocortical input stratum

Pyramidal tract neurons (PTs) represent the major output cell type of the neocortex. To investigate principles of how the results of cortical processing are broadcasted to different downstream targets thus requires experimental approaches, which provide access to the in vivo electrophysiology of PTs, whose subcortical target regions are identified. On the example of rat barrel cortex (vS1), we illustrate that retrograde tracer injections into multiple subcortical structures allow identifying the long-range axonal targets of individual in vivo recorded PTs. Here we report that soma depth and dendritic path lengths within each cortical layer of vS1, as well as spiking patterns during both periods of ongoing activity and during sensory stimulation, reflect the respective subcortical target regions of PTs. We show that these cellular properties result in a structure–function parameter space that allows predicting a PT’s subcortical target region, without the need to inject multiple retrograde tracers.

Glycoprotein-deleted rabies virus (RABV ∆G) is a powerful tool for the analysis of neural circuits. Here, we demonstrate the utility of an anterograde RABV ∆G variant for novel neuroanatomical approaches involving either bulk or sparse neuronal populations. This technology exploits the unique features of RABV ∆G vectors, namely autonomous, rapid high-level expression of transgenes, and limited cytotoxicity. Our vector permits the unambiguous long-range and fine-scale tracing of the entire axonal arbor of individual neurons throughout the brain. Notably, this level of labeling can be achieved following infection with a single viral particle. The vector is effective over a range of ages (>14 months) aiding the studies of neurodegenerative disorders or aging, and infects numerous cell types in all brain regions tested. Lastly, it can also be readily combined with retrograde RABV ∆G variants. Together with other modern technologies, this tool provides new possibilities for the investigation of the anatomy and physiology of neural circuits.