Taking advantage of the uniquely constricted active site of SARS-CoV-2 Nsp14
methyltransferase, we have designed bisubstrate inhibitors interacting with the SAM and
RNA substrate binding pockets. Our efforts have led to nanomolar inhibitors including
compounds
3
and
10
. As a prototypic inhibitor, compound
3
also has an excellent selectivity profile over a panel of human
methyltransferases. Remarkably,
C
-nucleoside
10
exhibits
high antiviral activity and low cytotoxicity, leading to a therapeutic index
(CC
50
/EC
50
) greater than 139. Furthermore, a brief metabolic
profiling of these two compounds suggests that they are less likely to suffer from major
metabolic liabilities. Moreover, computational docking studies point to
protein–ligand interactions that can be exploited to enhance inhibitory activity.
In short, discovery of inhibitor
10
clearly demonstrates that potent and
selective anti-SARS-CoV-2 activity can be achieved by targeting the Nsp14
methyltransferase. Therefore, the current work strongly supports the continued pursuit
of Nsp14 methyltransferase inhibitors as COVID-19 therapeutics.
Resistance selection by human immunodeficiency virus (HIV) towards known drug regimens necessitates the discovery of structurally novel antivirals with a distinct resistance profile. Based on our previously reported 3-hydroxypyrimidine-2,4-dione (HPD) core we have designed and synthesized a new integrase strand transfer (INST) inhibitor type featuring a 5-N-benzylcarboxamide moiety. Significantly, the 6-alkylamino variant of this new chemotype consistently conferred low nanomolar inhibitory activity against HIV-1. Extended antiviral testing against a few raltegravir-resistant HIV-1 clones revealed a resistance profile similar to that of the second generation INST inhibitor (INSTIs) dolutegravir. Although biochemical testing and molecular modeling also strongly corroborate the inhibition of INST as the antiviral mechanism of action, selected antiviral analogues also potently inhibited reverse transcriptase (RT) associated RNase H, implying potential dual target inhibition. In vitro ADME assays demonstrated that this novel chemotype possesses largely favorable physicochemical properties suitable for further development.
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