Purpose-To determine the effect of repeated intermittent apnea and resuscitation with 100% vs. 21% oxygen enriched gas on levels of key regulatory proteins contributing to cell death (Bax, Caspase-3) or protecting neurons from hypoxic/ischemic injury (Bcl-2, p-Akt, p-CREB).Methods-The anaesthetized, mechanically ventilated newborn piglets underwent 10 episodes of apnea with resuscitation either with 21% or with 100% oxygen. Following 6-hrs recovery the animals were euthanized, the striatum, frontal cortex, midbrain and hippocampus were dissected out and used to determine levels of Bcl-2, Bax, Caspase-3, p-Akt and p-CREB.Results-In hippocampus and striatum, Bcl-2 expression was higher with 100% vs. 21% group (173±29% vs.121±31%, p<0.05 and 189±10% vs.117±47%, p<0.01, respectively) whereas the Bax expression was lower (88±3% vs.100±9%, p<0.05 and 117±5% vs.133±10%, p<0.05, respectively). Expression of Caspase-3 in striatum, was higher with 21% vs.100% group (263±33% vs.197±35%, p<0.05, respectively) but not different in hippocampus. p-Akt expression was higher with 100% vs. 21% oxygen in hippocampus and striatum (225±44% vs. 108±35%, p<0.01 and 215±12% vs.164 ±16%, p<0.01, respectively). The p-CREB expression was higher with 100% vs. 21% oxygen resuscitation in hippocampus (217±41% vs.132±30%, p<0.01) with not changes in striatum. Much smaller or not significant differences between 100% vs.21% oxygen groups were observed in frontal cortex and midbrain, respectively. Conclusion-In neonatal piglet model of intermittent apnea, selectively vulnerable regions of brain (striatum and hippocampus) are better protected from apneic dependent injury when resuscitation was conducted with 100%, rather than 21%, oxygen enriched gas.