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Deprivation of protection for aquatic hyphomycetes is disturbing because they are key players in freshwater ecosystems across the globe. To attain a more holistic conservation paradigm for biodiversity in freshwaters, it is necessary to broaden our ecological perception of microfungi, mainly in aquatic hyphomycetes. A considerable groundwork still needs to be accomplished in progressing towards conserving aquatic hyphomycetes. Overcoming the paucity of information regarding the rare and endangered species, biogeography and above all, a global biodiversity database, would be a significant contribution in the initiation of an overarching conservation strategy for aquatic hyphomycetes. Being aware that the biodiversity decline in freshwaters is alarming, here we seek to explore why biodiversity data of aquatic hyphomycetes are missing. This article closely examines the threats to the biodiversity of aquatic hyphomycetes and freshwater ecosystems. Moving forward, we advocate a structured approach to gaining a thorough understanding to embrace aquatic hyphomycetes biodiversity into the conservation strategies. Including aquatic hyphomycetes in the conservation objectives may attract more funding opportunities for global surveys to initiate a fungal inclusive conservation era. Fungal conservation ventures can profit from interdisciplinary collaborations and cutting-edge science and technology, leading to informed decision making for biodiversity assessment and management.

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Salinisation (i.e. increased ion concentrations) in fresh waters is a growing threat worldwide that impacts freshwater communities. However, less is known about how increased salt concentrations affect key ecosystem processes such as leaf decomposition. We designed a laboratory experiment to assess the effects of a concentration gradient (1, 3, and 6 g/L) of three different salts (NaCl, CaCl2 and CH3CO2K), on leaf litter decomposition mediated by microbial decomposers and the larvae of a cased caddis fly (Schizopelex festiva, Trichoptera). Leaf discs of Quercus robur inoculated with microbial decomposers (a mixture of 5 fungal species) were incubated in microcosms under every possible salt × concentration combination and without salt addition (control), with a single individual of the cased caddis fly. Half of the leaf disks were not available for consumption by the trichopteran and represent a microbial only treatment when leaf mass loss was measured. Leaf decomposition driven by microbial decomposers was not affected by salinity despite the fact that all salt treatments depressed fungal biomass and microbial respiration compared to the control. However, the caddis flies were strongly affected by the high salt concentrations and consumed less leaf material at 6 g/L salt concentrations compared to control microcosms. The feeding activity of the trichopteran further depended on the salt type: CaCl2 had the most deleterious effects. Salinisation of fresh waters depresses leaf litter decomposition, mainly through deleterious effects on detritivores, the magnitude of the response being dependent on the ionic composition. Our results reiterate the need to reduce terrestrial run‐off of salts into fresh waters because salinisation (especially increased levels of CaCl2) affects invertebrates and the key ecosystem processes they drive.