Drainage has turned peatlands from a carbon sink into one of the world's largest greenhouse gas (GHG) sources from cultivated soils. We analyzed a unique data set (12 peatlands, 48 sites and 122 annual budgets) of mainly unpublished GHG emissions from grasslands on bog and fen peat as well as other soils rich in soil organic carbon (SOC) in Germany. Emissions and environmental variables were measured with identical methods. Site-averaged GHG budgets were surprisingly variable (29.2 ± 17.4 t CO -eq. ha yr ) and partially higher than all published data and the IPCC default emission factors for GHG inventories. Generally, CO (27.7 ± 17.3 t CO ha yr ) dominated the GHG budget. Nitrous oxide (2.3 ± 2.4 kg N O-N ha yr ) and methane emissions (30.8 ± 69.8 kg CH -C ha yr ) were lower than expected except for CH emissions from nutrient-poor acidic sites. At single peatlands, CO emissions clearly increased with deeper mean water table depth (WTD), but there was no general dependency of CO on WTD for the complete data set. Thus, regionalization of CO emissions by WTD only will remain uncertain. WTD dynamics explained some of the differences between peatlands as sites which became very dry during summer showed lower emissions. We introduced the aerated nitrogen stock (N ) as a variable combining soil nitrogen stocks with WTD. CO increased with N across peatlands. Soils with comparatively low SOC concentrations showed as high CO emissions as true peat soils because N was similar. N O emissions were controlled by the WTD dynamics and the nitrogen content of the topsoil. CH emissions can be well described by WTD and ponding duration during summer. Our results can help both to improve GHG emission reporting and to prioritize and plan emission reduction measures for peat and similar soils at different scales.

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Summary Peatlands are an important component of the global carbon cycle because they comprise huge amounts of terrestrial carbon (C). Different conditions during peat formation and secondary peat decomposition affect the quantity and composition of soil organic matter (SOM) in peats. There are few comparative studies on the chemical composition of SOM in temperate peatland soil. This study investigates compositional changes of SOM functional groups in peats and corresponding peat‐forming plants by Fourier transform infrared (FTIR) spectroscopy. Three plant samples and 29 peat samples were taken from seven temperate peatland sites with different genesis and land‐use intensity. Site‐specific differences, such as genesis of the peat, were found to be reflected in the FTIR spectra. In general, there was more variation in FTIR spectra in samples from fens than in those from bogs and peat‐forming plants. The samples from fens have a smaller C–H absorption band than those from bogs and plants, which reflects greater biochemical activity in the minerotrophic than ombrotrophic environments. In addition to peat genesis, drainage and secondary peat decomposition also affect SOM composition substantially. The larger amounts of aliphatic compounds in undrained peats could be explained by selective preservation caused by anaerobic conditions. With increasing drainage of the sites, there was a decrease in the C–H absorption that was accompanied by a relative increase in C=O absorption. These changes in absorption intensities reflect the enhanced aerobic decomposition and mineralization that accompanies drainage and land‐use intensity. However, the ‘degree of peat decomposition’, a diagnostic tool used in the field, is not reflected by OM composition determined by FTIR spectroscopy. Our results contribute to further understanding of changes in SOM composition during peat formation and processes of secondary decomposition caused by drainage.

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