Half of coral species that occur on Caribbean reefs have also been reported living in mangroves. Given the vulnerability of corals living on reefs to environmental change, populations of the same species living in mangroves may prove critical to longterm survival of these coral species and the resilience of nearby reefs. To date, few studies have addressed the health and viability of mangrove coral populations, which is necessary if we are to understand their role in the broader meta-community.Here we present the first longitudinal study of the distribution, survival, growth, and recruitment of a mangrove coral population over multiple years. From 2014 to 2018, we fully censused a population of Porites divaricata along 640 meters of a mangrovelined channel at Calabash Caye, Belize, and beginning in 2015, we tagged individual colonies for longitudinal monitoring. Year-to-year survivorship averaged 66.6% (±3.9 SE), and of the surviving colonies, on average, 72.7% (±2.5 SE) experienced net growth. The number of colonies, their spatial distribution, and population size-structure were essentially unchanged, except for an unusually high loss of larger colonies from 2016 to 2017, possibly the result of a local disturbance. However, each annual census revealed substantial turnover. For example, from 2016 to 2017, the loss or death of 72 colonies was offset by the addition of 89 recruits. Integral projection models (IPM) for two consecutive one-year intervals implicated recruitment and the persistence of large colonies as having the largest impacts on population growth. This 5-year study suggests that the P. divaricata population in the mangroves is viable, but may be routinely impacted by disturbances that cause the mortality of larger colonies. As many corals occur across a mosaic of habitat types, understanding the population dynamics and life-history variability of corals across habitats, and quantifying genetic exchange between habitats, will be critical to forecasting the fate of individual coral species and to maximizing the efficacy of coral restoration efforts.

Mangrove prop roots support diverse epibiont communities, but they are generally regarded as inhospitable for corals. However, recent reports have documented corals thriving on mangrove roots in the U.S. Virgin Islands and Cuba, and it has been proposed that mangroves may provide a refuge from environmental conditions that trigger coral mortality on nearby reefs. It also raises interesting questions about the potential evolutionary significance of coral populations in mangrove forest. We investigated diverse

As coral reefs experience dramatic declines in coral cover throughout the tropics, there is an urgent need to understand the role that non-reef habitats, such as mangroves, play in the ecological niche of corals. Mangrove habitats present a challenge to reef-dwelling corals because they can differ dramatically from adjacent reef habitats with respect to key environmental parameters, such as light. Because variation in light within reef habitats is known to drive intraspecific differences in coral phenotype, we hypothesized that coral species that can exploit both reef and mangrove habitats will exhibit predictable differences in phenotypes between habitats. To investigate how intraspecific variation, driven by either local adaptation or phenotypic plasticity, might enable particular coral species to exploit these two qualitatively different habitat types, we compared the phenotypes of two widespread Caribbean corals, Porites divaricata and Porites astreoides, in mangrove versus lagoon habitats on Turneffe Atoll, Belize. We document significant differences in colony size, color, structural complexity, and corallite morphology between habitats. In every instance, the phenotypic differences between mangrove prop root and lagoon corals exhibited consistent trends in both P. divaricata and P. astreoides. We believe this study is the first to document intraspecific phenotypic diversity in corals occupying mangrove prop root versus lagoonal patch reef habitats. A difference in the capacity to adopt an alternative phenotype that is well suited to the mangrove habitat may explain why some reef coral species can exploit mangroves, while others cannot.

Corals are critical to marine biodiversity. Reproduction and dispersal are key to their resilience, but rarely quantified in nature. Exploiting a unique system—a fully censused, longitudinally characterized, semi-isolated population inhabiting mangroves—we used 2bRAD sequencing to demonstrate that rampant asexual reproduction most likely via parthenogenesis and limited dispersal enable the persistence of a natural population of thin-finger coral ( Porites divaricata ). Unlike previous studies on coral dispersal, knowledge of colony age and location enabled us to identify plausible parent–offspring relationships within multiple clonal lineages and develop tightly constrained estimates of larval dispersal; the best-fitting model indicates dispersal is largely limited to a few metres from parent colonies. Our results explain why this species is adept at colonizing mangroves but suggest limited genetic diversity in mangrove populations and limited connectivity between mangroves and nearby reefs. As P. divaricata is gonochoristic, and parthenogenesis would be restricted to females (whereas fragmentation, which is presumably common in reef and seagrass habitats, is not), mangrove populations likely exhibit skewed sex ratios. These findings suggest that coral reproductive diversity can lead to distinctly different demographic outcomes in different habitats. Thus, coral conservation will require the protection of the entire coral habitat mosaic, and not just reefs.

Historically, staghorn coral (Acropora cervicornis) was a preeminent reef-builder in the Caribbean and Tropical Western Atlantic, where it constructed extensive thickets at 5-20 m depth that supported diverse ecosystems and provided coastal populations with food, storm protection, and income from tourism. In recent decades, A. cervicornis declined precipitously, up to 97% in some localities. To reverse its decline, widespread efforts are underway to characterize the phenotypic and genetic diversity of persisting populations with the goal of restoring them to historical levels by out-planting nursery grown specimens. To support this target, we developed transcriptomes for two A. cervicornis populations located in Turneffe Atoll Marine Reserve, Belize. These populations experience significantly different temperatures, light levels and water currents, and they harbor individuals that differ in key phenotypes. Because differentiating the gene activity of diverse taxa, i.e., coral host, algal photosymbiont, plus associated eukaryotes, bacteria, archaea, and viruses, is critical to understanding the function of the coral holobiont, we developed a pipeline for parsing transcripts by taxon. Separate transcriptomes for each population contain complete representatives for >96% of 978 conserved metazoan single copy orthologs. The taxonomic breakdown of transcripts differed between sites, with more bacterial transcripts recovered from Calabash Caye and more symbiont transcripts from Blackbird Caye. The assembled transcriptomes will facilitate gene expression studies and in silico cloning from this endangered coral.