The planarity of the aromatic stage of two-dimensional Si and Ge layers are theoretically investigated by first-principles total-energy calculations. While a C atom prefers to form the flat aromatic stage, i.e. , graphite, Si and Ge prefer to form the corrugated aromatic stage. Si can be said to be the critical element by which the corrugated stage is formed.
Possible molecular conformations in peptide nanorings and nanotubes were theoretically
investigated by a mathematical conformation analysis as well as ab initio Hartree−Fock calculations. The
mathematical analysis predicts not only the conventional nanorings having an extended-type (E-type)
backbone (trans zigzag) but also the novel ones having bound-type (B-type) backbones with a smaller
internal diameter. Ab initio calculations for the amino acid substitution reveal that all 20 encoded residues
can form both types of the above nanorings as a local minimum. However, the energetically stable type is
determined in accordance with the kind of the replaced side chains. Moreover, the present work theoretically
reveals that both types of nanorings stack to form nanotubes through inter-ring hydrogen bonds, i.e., larger
E-type nanotubes and smaller B-type nanotubes. Electronically, the HOMO and LUMO states of the nanoring
and nanotube backbones are formed by the in-plane π state. The replacement by the appropriate residues
is furthermore predicted to intrude additional levels in the energy gap and to form the frontier states localized
at the side chains.
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