Understanding the fundamental reactivity of polymetallic complexes is challenging due to the complexity of their structures with many possible bond breaking and forming processes. Here, we apply ion mobility mass spectrometry coupled with density functional theory to investigate the disassembly mechanisms and energetics of a family of heterometallic rings and rotaxanes with the general formula [NH 2 RR'][Cr 7 MF 8 (O 2 C t Bu) 16 ] with
The induced fit binding model describes a conformational change occurring when a small molecule binds to its biomacromolecular target. The result is enhanced noncovalent interactions between the ligand and biomolecule. Induced fit is well-established for small molecule-protein interactions, but its relevance to small molecule-DNA binding is less clear. We investigate the molecular determinants of Hoechst33258 binding to its preferred A-tract sequence relative to a suboptimal alternating A-T sequence. Results from two-dimensional infrared spectroscopy, which is sensitive to H-bonding and molecular structure changes, show that Hoechst33258 binding results in loss of the minor groove spine of hydration in both sequences, but an additional perturbation of the base propeller twists occurs in the A-tract binding region. This induced fit maximizes favorable ligand-DNA enthalpic contributions in the optimal binding case and demonstrates that controlling the molecular details that induce subtle changes in DNA structure may hold the key to designing next-generation DNA-binding molecules.
Experimental data
on the effects that different antisolvents and
antisolvent addition strategies have on nucleation behavior in antisolvent
crystallization is very limited, and our understanding of these effects
is sparse. In this work we measured the metastable zone width for
the isothermal antisolvent crystallization of glycine from water utilizing
methanol, ethanol, and dimethylformamide as antisolvents. We then
investigated induction times for glycine crystallization across these
metastable zones using the same three antisolvents. Supersaturated
solutions were prepared by mixing of an antisolvent with undersaturated
aqueous glycine solutions, either by batch rapid addition or using
a continuous static mixer. Induction times were then recorded under
agitated isothermal conditions in small vials with the use of webcam
imaging and vary from apparently instant to thousands of seconds over
a range of compositions and different mixing modes. Well-defined induction
times were detected across most of the metastable zone, which shows
that primary nucleation is significant at supersaturations much lower
than those identified in conventional metastable zone width measurements.
As supersaturation increases toward the metastable zone limit, crystal
growth and secondary nucleation are likely to become rate-limiting
factors in the observed induction times for antisolvent crystallization.
Furthermore, the observed induction times were strongly dependent
on the mode of mixing (batch rapid addition vs continuous static mixing),
which demonstrates an interplay of antisolvent effects on nucleation
with their effects on mixing, leading to crossover of mixing and nucleation
time scales. This shows that appropriate mixing strategies are crucial
for the rational development of robust scalable antisolvent crystallization
processes.
Organisms across the natural world respond to their environment through the action of photoreceptor proteins. The vitamin B12-dependent photoreceptor, CarH, is a bacterial transcriptional regulator that controls the biosynthesis of...
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