BackgroundNumerous rye accessions are stored in ex situ genebanks worldwide. Little is known about the extent of genetic diversity contained in any of them and its relation to contemporary varieties, since to date rye genetic diversity studies had a very limited scope, analyzing few loci and/ or few accessions. Development of high throughput genotyping methods for rye opened the possibility for genome wide characterizations of large accessions sets. In this study we used 1054 Diversity Array Technology (DArT) markers with defined chromosomal location to characterize genetic diversity and population structure in a collection of 379 rye accessions including wild species, landraces, cultivated materials, historical and contemporary rye varieties.ResultsAverage genetic similarity (GS) coefficients and average polymorphic information content (PIC) values varied among chromosomes. Comparison of chromosome specific average GS within and between germplasm sub-groups indicated regions of chromosomes 1R and 4R as being targeted by selection in current breeding programs. Bayesian clustering, principal coordinate analysis and Neighbor Joining clustering demonstrated that source and improvement status contributed significantly to the structure observed in the analyzed set of Secale germplasm. We revealed a relatively limited diversity in improved rye accessions, both historical and contemporary, as well as lack of correlation between clustering of improved accessions and geographic origin, suggesting common genetic background of rye accessions from diverse geographic regions and extensive germplasm exchange. Moreover, contemporary varieties were distinct from the remaining accessions.ConclusionsOur results point to an influence of reproduction methods on the observed diversity patterns and indicate potential of ex situ collections for broadening the genetic diversity in rye breeding programs. Obtained data show that DArT markers provide a realistic picture of the genetic diversity and population structure present in the collection of 379 rye accessions and are an effective platform for rye germplasm characterization and association mapping studies.

Abstract. This paper presents results of a long‐term study on natural forest dynamics in the Białowieza National Park (BNP), northeastern Poland. Five permanent sample areas were used, each consisting of a transect of varying width (40 ‐ 60 m) and length (200 ‐ 1380 m). The total sample area is 14.9 ha. The study covers the period 1936–1992. During this period measurements were made on five occasions at approximately 10‐yr intervals. On each measurement date all trees with DBH > 5 cm were identified and their spatial location, diameter, crown condition and position in the canopy determined. During the study period the stands underwent noticeable changes, mainly in terms of tree species composition. The major change was a quantitative increase of the late‐successional species: Tilia cordata and Carpinus betulus, also to a lesser degree Fraxinus excelsior and, in the last period, of the early successional Alnus glutinosa. Declining species included both early‐ and late‐succession species. Among the latter group, Picea abies ranked first. This species lost much of its importance during the last few decades. P. abies was followed by Pinus sylvestris which is an important component of the climax vegetation under the conditions prevailing in Bialowieza, at least on more oligotrophic sites. Still, this species has not been able to regenerate during the whole study period. Some other late‐succession species, Acer platanoides and Quercus robur, were also amongst the declining species. Although the basal area of Q. robur increased, its population was getting older and the process of natural regeneration was markedly impeded. All typical pioneer, short‐lived species: Betula pendula and B. pubescens, Salix caprea and Populus tremula also decreased, which was probably caused by a lack of major disturbances during the study period. In general, the results obtained for the semi‐natural conditions of Bialowieza during the 56‐yr observation period suggest a rather high compositional instability of the forest stands there. A more precise identification of the role of particular factors in the observed stand dynamics is difficult because of the paucity of appropriate historical and environmental data which refer directly to the study plots; moreover, the data are generally incompatible and of different resolution.

The wild population of fallow deer in Central Europe has grown considerably over the last decade. However, information on feeding habits of this alien species in relation to the indigenous red deer or roe deer, in areas of their co-occurrence, is scarce. A prevailing view maintains that their food-niches are distinct, although direct comparative studies have not been carried out. Therefore, the aim of the research was to compare the diets of fallow, red, and roe deer feeding in the same habitat. Research was based on the rumen contents of 242 animals hunted in the autumn-winter season in the forests of Southern Poland. The analyses demonstrated that fallow deer are moderate grazers in such conditions and eat more graminoids in comparison to red or roe deer (36.4% vs. 16.1% or 5.5%, respectively). On the other hand, it feeds on less browse (17.2% vs. 41.4%) or dwarf shrubs (8.4% vs. 19.0%) than red deer, and on less bramble (10.9% vs. 34.6%) or forbs (4.0% vs. 7.6%) in comparison to roe deer (P=0.05). Although the diets of the three deer species differ in terms of the proportion of each food type in their diet, overlapping of their food-niches is high (52.6%).

Benzoxazinoids (BXs) are secondary metabolites with diverse functions, but are primarily involved in protecting plants, mainly from the family Poaceae, against insects and fungal pathogens. Rye is a cereal crop that is highly resistant to biotic stresses. However, its susceptibility to brown rust caused by Puccinia recondita f. sp. secalis (Prs) is still a major problem affecting its commercial production. Additionally, the genetic and metabolic factors related to this disease remain poorly characterized. In this study, we investigated whether and to what extent the brown rust infection and the inoculation procedure affect the contents of specific BXs (HBOA, GDIBOA, DIBOA, GDIMBOA, DIMBOA, and MBOA) and the expression of genes related to BX (ScBx1-5, ScIgl, and Scglu). We revealed that treatments with water and a urediniospore suspension usually downregulate gene expression levels. Moreover, HBOA and DIBOA contents decreased, whereas the contents of the remaining metabolites increased. Specifically, the MBOA content increased more after the mock treatment than after the Prs treatment, whereas the increase in GDI-BOA and GDIMBOA levels was usually due to the Prs infection, especially at two of the most critical time-points, 17 and 24 h post-treatment. Therefore, GDIBOA and GDIMBOA are glucosides that are important components of rye defence responses to brown rust. Furthermore, along with MBOA, they protect rye against the stress associated with the inoculation procedure used in this study.

1. Controversies about successional dynamics of woodland communities have a long history, dating back to the classical debates between Clements and Gleason and continuing into the present. These debates have largely concerned the predictability or convergence of forest developmental trends as well as the relative importance of different mechanisms and forces driving forest succession. However, opportunities for rigorous testing of competing hypotheses are limited, mainly because plot-based studies of forest vegetation spanning more than a decade are scarce and even fewer concern late-successional stands.2. We exploit a unique long-term dataset from mesic temperate forests of eastern Poland, spanning c. 80 years in strictly protected, late-successional woodlands assigned to seven different 'structural types'. We use non-metric multidimensional scaling to assess the stability of species composition over the study period.We examine the predictability of composition and change trajectories over time usingMantel statistics, and we examine the changes in distributions of dissimilarity indices to assess convergence or divergence at the examined time and spatial scales. Tree communities inBiałowieża Forest have changed substantially over the last eight decades. Several species (aspen, birch, pine, oak, ash, maple and spruce) exhibited large decreases in density, while a few other species (especially hornbeam and lime) have increased in importance across a wide range of initial compositional types. Forest types recognized in earlier periods have become much less distinguishable. Metrics do not yet show clear successional convergence, mainly due to (a) decline in the previously broadly distributed spruce and (b) persistence of large individuals of intermediate, long-lived species (even though these species lack significant regeneration). 4. Synthesis. Late-successional woodland communities of Białowieża Forest are clearly dynamic and do not show quasi-equilibrial properties often assumed of old-growth forests. Forest types previously recognized as distinct have become This is an open access article under the terms of the Creat ive Commo ns Attri bution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.