Functional cDNA clones coding for three isoforms of the human prostaglandin E receptor EP, subtype have been isolated from kidney and uterus cDNA libraries. The three isoforms, designated hEP,_,, hEP,_,, and hEP,_,,,, have open reading frames corresponding to 390,388 and 365 amino acids, respectively. They differ only in the length and amino acid composition of their carboxy-terminal regions, beginning at position 360. The human EP, receptor has seven predicted transmembrane spanning domains and therefore belongs to the G-protein-coupled receptor family. The rank order of potency for prostaglandins and related analogs in competition for [3H]PGE, specific binding to membranes prepared from transfected COS cells was comparable for all three isoforms, and as predicted for the EP, receptor, with PGEz = PGE, >> PGF, = iloprost > PGD, >> U46619. In addition, the EP,-selective agonist MB28767 was a potent competing ligand with an IC, value of 0.3 nM, whereas the EP,-selective antagonist AH6909 gave IC,, values of 2-7 PM and the EP,-selective agonist butaprost was inactive. In summary, we have cloned three isoforms of the human EP, receptor having comparable ligand binding properties.