Furfural is a platform molecule that can be catalytically converted using a cascade series of reactions into levulinic esters, essential compounds used as fuel additives. Bifunctional catalysts containing Lewis and Brønsted acid sites such as zeolites are commonly used for these conversions. However, microporous zeolites often present diffusional restriction due to the size similarity of furfural and other molecules to the zeolites’ micropores. Thus, incorporating mesopores in these materials through post-synthetic protocols is a promising pathway to circumventing these limitations. This study presents the creation of hierarchical beta and mordenite using Si or Al removal and their employment in the furfural conversion to isopropyl levulinate (PL). Mordenite zeolite did not produce satisfactory mesopores, while the beta was more efficient in generating them by both acid and alkaline treatments. Beta zeolite treated in an alkaline solution presented larger mesopores (14.9 and 34.0 nm), maintaining a total acidity value close to its parent zeolite and a higher Lewis/Brønsted ratio. The combination of these features led to an improved diffusion of bulkier products and the highest furfural conversion (94%) and PL selectivity (90%), suggesting that a post-modification of beta zeolites produced efficient catalysts for upgrading abundantly available furfural.