Quinoa was the traditional grain crop used by the prehispanic civilizations in America. Grains are white, black, yellow, and red-violet and plants are cultivated in vast areas of Peru, Bolivia and Ecuador. The recent description of the betacyanin pigment betanin in red-violet varieties is here further analyzed detecting the presence of amaranthin not previously identified in quinoa grains. Yellow-orange grains are characterized for the first time and up to four different betaxanthins are found to be responsible for this coloration. The native fluorescence of the identified betaxanthins makes the surface of the yellow quinoa grains glow with green fluorescent light. The presence of betalains is correlated with high antioxidant and free radical scavenging activities measured under the FRAP, ABTS and ORAC assays in grain extracts of 29 Peruvian varieties. TEAC equivalence is as high as 44.1 and 47.4mmol Trolox/kg for the yellow and red-violet varieties analyzed respectively.
Soil salinity is a major problem in today's agriculture. Quinoa has become an important crop because it exhibits high levels of salinity tolerance. In addition, its seeds contain an excellent balance of carbohydrates, lipids, amino acids and proteins for human nutrition. The quinoa germplasm includes almost 2500 accessions, some of which have been tested under salt stress. Here, we report the effect of NaCl on the germination of 182 previously untested accessions. When seeds were irrigated with saline water at 30 dS m )1 EC, the stress appeared to be too high: all accessions showed less than 60 % germination. In contrast, irrigation with 25 dS m )1 EC saline water allowed over 60 % germination in 15 accessions. These latter accessions' agricultural traits were then evaluated. The overall coefficients of variation indicated that quinoa genotype and salt treatment dramatically influence root dry mass per plant, but do not noticeably affect the length of the plant's life cycle. Unexpectedly, salt treatment resulted in increased plant height, leaf dry mass and grain yield. Using Euclidean distance for the simultaneous selection of these five agricultural traits, accessions 100, 136, 127 and 105 proved to be the best performing genotypes under salt stress.
Premise
Cañahua is a semi‐domesticated crop grown in high‐altitude regions of the Andes. It is an A‐genome diploid (2n = 2x = 18) relative of the allotetraploid (AABB) Chenopodium quinoa and shares many of its nutritional benefits. Cañahua seed contains a complete protein, a low glycemic index, and offers a wide variety of nutritionally important vitamins and minerals.
Methods
The reference assembly was developed using a combination of short‐ and long‐read sequencing techniques, including multiple rounds of Hi‐C–based proximity‐guided assembly.
Results
The final assembly of the ~363‐Mbp genome consists of 4633 scaffolds, with 96.6% of the assembly contained in nine scaffolds representing the nine haploid chromosomes of the species. Repetitive element analysis classified 52.3% of the assembly as repetitive, with the most common repeat identified as long terminal repeat retrotransposons. MAKER annotation of the final assembly yielded 22,832 putative gene models.
Discussion
When compared with quinoa, strong patterns of synteny support the hypothesis that cañahua is a close A‐genome diploid relative, and thus potentially a simplified model diploid species for genetic analysis and improvement of quinoa. Resequencing and phylogenetic analysis of a diversity panel of cañahua accessions suggests that coordinated efforts are needed to enhance genetic diversity conservation within ex situ germplasm collections.
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