Biomedical ontologies provide essential domain knowledge to drive data integration, information retrieval, data annotation, natural-language processing and decision support. BioPortal (http://bioportal.bioontology.org) is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies. The Web interface also facilitates community-based participation in the evaluation and evolution of ontology content by providing features to add notes to ontology terms, mappings between terms and ontology reviews based on criteria such as usability, domain coverage, quality of content, and documentation and support. BioPortal also enables integrated search of biomedical data resources such as the Gene Expression Omnibus (GEO), ClinicalTrials.gov, and ArrayExpress, through the annotation and indexing of these resources with ontologies in BioPortal. Thus, BioPortal not only provides investigators, clinicians, and developers ‘one-stop shopping’ to programmatically access biomedical ontologies, but also provides support to integrate data from a variety of biomedical resources.
Question and Answer (Q&A) websites, such as Stack Overflow, use social media to facilitate knowledge exchange between programmers and fill archives with millions of entries that contribute to the body of knowledge in software development. Understanding the role of Q&A websites in the documentation landscape will enable us to make recommendations on how individuals and companies can leverage this knowledge effectively. In this paper, we analyze data from Stack Overflow to categorize the kinds of questions that are asked, and to explore which questions are answered well and which ones remain unanswered. Our preliminary findings indicate that Q&A websites are particularly effective at code reviews and conceptual questions. We pose research questions and suggest future work to explore the motivations of programmers that contribute to Q&A websites, and to understand the implications of turning Q&A exchanges into technical mini-blogs through the editing of questions and answers.
It remains challenging for information visualization novices to rapidly construct visualizations during exploratory data analysis. We conducted an exploratory laboratory study in which information visualization novices explored fictitious sales data by communicating visualization specifications to a human mediator, who rapidly constructed the visualizations using commercial visualization software. We found that three activities were central to the iterative visualization construction process: data attribute selection, visual template selection, and visual mapping specification. The major barriers faced by the participants were translating questions into data attributes, designing visual mappings, and interpreting the visualizations. Partial specification was common, and the participants used simple heuristics and preferred visualizations they were already familiar with, such as bar, line and pie charts. We derived abstract models from our observations that describe barriers in the data exploration process and uncovered how information visualization novices think about visualization specifications. Our findings support the need for tools that suggest potential visualizations and support iterative refinement, that provide explanations and help with learning, and that are tightly integrated into tool support for the overall visual analytics process.
Software developers use many different communication tools and channels in their work. The diversity of these tools has dramatically increased over the past decade, giving rise to a wide range of socially enabled communication channels and social media that developers use to support their activities. The availability of such social tools is leading to a participatory culture of software development, where developers want to engage with, learn from, and co-create software with other developers. However, the interplay of these social channels, as well as the opportunities and challenges they may create when used together within this participatory development culture, are not yet well understood. In this paper, we report on a large-scale survey conducted with 1,449 GitHub users. We describe which channels these developers find essential to their work and gain an understanding of the challenges they face using them. Our findings lay the empirical foundation for providing recommendations to developers and tool designers on how to use and improve tools for developers.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
customersupport@researchsolutions.com
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.
Copyright © 2024 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.