BackgroundComprehensive two-dimensional gas chromatography coupled with time-of-flight mass spectrometry (GCxGC-TOF MS) has been proposed as a powerful new tool for multidimensional analysis of complex chemical mixtures. We investigated GCxGC-TOF MS as a new method for identifying volatile organic compounds (VOCs) in normal human breath.MethodsSamples of alveolar breath VOCs and ambient room air VOC were collected with a breath collection apparatus (BCA) onto separate sorbent traps from 34 normal healthy volunteers (mean age = 40 yr, SD = 17 yr, male/female = 19/15). VOCs were separated on two serial capillary columns separated by a cryogenic modulator, and detected with TOF MS. The first and second dimension columns were non-polar and polar respectively.ResultsBCA collection combined with GC×GC-TOF MS analysis identified approximately 2000 different VOCs in samples of human breath, many of which have not been previously reported. The 50 VOCs with the highest alveolar gradients (abundance in breath minus abundance in ambient room air) mostly comprised benzene derivatives, acetone, methylated derivatives of alkanes, and isoprene.ConclusionsCollection and analysis of breath VOCs with the BCA-GC×GC-TOF MS system extended the size of the detectable human volatile metabolome, the volatome, by an order of magnitude compared to previous reports employing one-dimensional GC-MS. The size of the human volatome has been under-estimated in the past due to coelution of VOCs in one-dimensional GC analytical systems.

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A novel peak alignment algorithm using a distance and spectrum correlation optimization (DISCO) method has been developed for two-dimensional gas chromatography time-of-flight mass spectrometry (GC×GC/TOF-MS) based metabolomics. This algorithm uses the output of the instrument control software, ChromaTOF, as its input data. It detects and merges multiple peak entries of the same metabolite into one peak entry in each input peak list. After a z-score transformation of metabolite retention times, DISCO selects landmark peaks from all samples based on both two-dimensional retention times and mass spectrum similarity of fragment ions measured by Pearson's correlation coefficient. A local linear fitting method is employed in the original twodimensional retention time space to correct retention time shifts. A progressive retention time map searching method is used to align metabolite peaks in all samples together based on optimization of the Euclidean distance and mass spectrum similarity. The effectiveness of the DISCO algorithm is demonstrated using data sets acquired under different experiment conditions and a spiked-in experiment.

An instrument for comprehensive two-dimensional gas chromatography (GCxGC) is described using an electrically heated and air-cooled thermal modulator requiring no cryogenic materials or compressed gas for modulator operation. In addition, at-column heating is used to eliminate the need for a convection oven and to greatly reduce the power requirements for column heating. The single-stage modulator is heated by current pulses from a dc power supply and cooled by a conventional two-stage refrigeration unit. The refrigeration unit, together with a heat exchanger and a recirculating pump, cools the modulator to about -30 degrees C. The modulator tube is silica-lined stainless steel with an internal film of dimethylpolysiloxane. The modulator tube is 0.18 mm i.d. x 8 cm in length. The modulator produces an injection plug width as small as 15 ms.

The design and performance evaluation of a two-stage resistively-heated thermal modulator that does not use any cryogenic consumables is described. A commercially available piece of stainless-steel wall coated capillary column is used as the modulator. Cooling of the modulator is provided by a two-stage refrigeration unit with an external heat exchanger and a closed-loop recirculating air system. The modulator is resistively heated by sending a current pulse through each stage of the modulator tube. Studies evaluating the modulator trapping efficiency, cooling efficiency, desorption efficiency, and resultant peak shape are presented and discussed. Performance evaluation of this modulator is compared to similar single-stage modulators, both qualitatively and quantitatively, and has exceeded the previous data reported for the single stage versions. GC Â GC chromatograms of a C 6 -C 20 n-alkane mixture, a petroleum sample, and a 38-component mixture of aliphatic, aromatic, and halogenated volatile organic compounds are provided. This two-stage modulator proves to be a viable alternative to commercially available modulators which require large amounts of cryogenic fluids.