Plants protect themselves from pathogen attacks via several mechanisms, including hypersensitive cell death. Recognition of pathogen attack by the plant resistance gene triggers expression of carboxylesterase genes associated with hypersensitive response. We identified six transcripts of carboxylesterase genes, Vitis flexuosa carboxylesterase 5585 (VfCXE5585), VfCXE12827, VfCXE13132, VfCXE17159, VfCXE18231, and VfCXE47674, which showed different expression patterns upon transcriptome analysis of V. flexuosa inoculated with Elsinoe ampelina. The lengths of genes ranged from 1,098 to 1,629 bp, and their encoded proteins consisted of 309 to 335 amino acids. The predicted amino acid sequences showed hydrolase like domains in all six transcripts and contained two conserved motifs, GXSXG of serine hydrolase characteristics and HGGGF related to the carboxylesterase family. The deduced amino acid sequence also contained a potential catalytic triad consisted of serine, aspartic acid and histidine. Of the six transcripts, VfCXE12827 showed upregulated expression against E. ampelina at all time points. Three genes (VfCXE5585, VfCXE12827, and VfCXE13132) showed upregulation, while others (VfCXE17159, VfCXE18231, and VfCXE47674) were down regulated in grapevines infected with Botrytis cinerea. All transcripts showed upregulated expression against Rhizobium vitis at early and later time points except VfCXE12827, and were downregulated for up to 48 hours post inoculation (hpi) after upregulation at 1 hpi in response to R. vitis infection. All tested genes showed high and differential expression in response to pathogens, indicating that they all may play a role in defense pathways during pathogen infection in grapevines.

Wheat (Triticum aestivum L.) demand in Bangladesh has increased significantly in recent years, becoming the second major staple cereal after rice (Oryza sativa L.). Domestic production of wheat accounts for only 16% of domestic use. More than 30 wheat varieties have been released in the past 30 yr by the Bangladesh Wheat and Maize Research Institute (BWMRI). In the last 10 yr alone, nine varieties with improved yield and disease resistance have been released. Bangladesh and the BWMRI lack the regulatory framework and infrastructure to accurately track the rate of adoption of these new releases. To determine the adoption of these varieties across the country, DNA fingerprinting of wheat samples was conducted across the six wheat growing regions in Bangladesh during the 2018–2019 cropping season. A reference library was established to compare and identify the wheat samples collected from farmers’ fields. Wheat grain samples collected from the fields and breeders’ lines were genotyped using Diversity Arrays Technology sequencing (DArTseq)‐based single nucleotide polymorphism (SNP) markers. Of the 1,791 samples collected from farmers’ fields, 68% were identified as varieties released after 2000 and 32% matched with older varieties. Among the varieties grown, BARI Gom 25 represented 29% of the collected samples followed by 23% of BARI Gom 24 and 16% of BARI Gom 26. These three most common varieties were well distributed across the six regions and have broad adoption.

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Nucleotide binding site-leucine-rich repeat (NBS-LRR) genes are the largest gene resistance family in plants. Resistance to Pseudomonas syringae 5 (RPS5) is a member of the NBS-LRR family. RPS5 and its homologs are important disease resistance genes in plants including Arabidopsis. This study identified nine loci of RPS5-like genes in Vitis flexuosa that showed differential expression from transcriptome analysis by next generation sequencing (NGS) of V. flexuosa infected with Elsinoe ampelina based on structural analyses: VfRPS5-like1059 (Vitis flexuosa resistance to Pseudomonas syringae 5-like 1059),