Ruminants have co-evolved with their gastrointestinal microbial communities that digest plant materials to provide energy for the host. Some arctic and boreal ruminants have already shown to be vulnerable to dietary shifts caused by changing climate, yet we know little about the metabolic capacity of the ruminant microbiome in these animals. Here, we use meta-omics approaches to sample rumen fluid microbial communities from Alaskan moose foraging along a seasonal lignocellulose gradient. Winter diets with increased hemicellulose and lignin strongly enriched for BS11, a Bacteroidetes family lacking cultivated or genomically sampled representatives. We show that BS11 are cosmopolitan host-associated bacteria prevalent in gastrointestinal tracts of ruminants and other mammals. Metagenomic reconstruction yielded the first four BS11 genomes; phylogenetically resolving two genera within this previously taxonomically undefined family. Genome-enabled metabolic analyses uncovered multiple pathways for fermenting hemicellulose monomeric sugars to short-chain fatty acids (SCFA), metabolites vital for ruminant energy. Active hemicellulosic sugar fermentation and SCFA production was validated by shotgun proteomics and rumen metabolites, illuminating the role BS11 have in carbon transformations within the rumen. Our results also highlight the currently unknown metabolic potential residing in the rumen that may be vital for sustaining host energy in response to a changing vegetative environment.
Understanding survival of and factors that may predispose newborn deer (Odocoileus spp.) to mortality contribute to improved understanding of population dynamics. We captured free‐ranging white‐tailed deer neonates (n = 66) of radiocollared females that survived severe (Winter Severity Index [WSI] = 153) and mild (WSI = 45) winters 2000–2001 and 2001–2002. Mean dates of birth (26 May ± 1.7 [SE] days and 26 May ± 1.3 days) and estimated birth‐masses of 2.8 ± 0.1 kg and 3.0 ± 0.1 kg were similar between springs 2001 (n = 31) and 2002 (n = 35), respectively. Neonate survival was similar between years; pooled mortality rates of neonates were 0.14, 0.11, and 0.20 at 0–1 weeks, 2–4 weeks, and 5–12 weeks of age, respectively, and overall survival rate for neonates to 12 weeks of age was 0.47. Predation accounted for 86% of mortality; the remaining 14% of deaths were attributed to unknown causes. Black bears (Ursus americanus) were responsible for 57% and 38% of predation of neonates in springs 2001 and 2002, respectively, whereas bobcats (Felis rufus) accounted for 50% in 2002. Wolves (Canis lupus) accounted for only 5% of predator‐related deaths. Low birth‐mass, smaller body size, and elevated concentrations of serum urea nitrogen (26.1 ± 2.6 mg/dL vs 19.3 ± 0.8 mg/dL) and tumor necrosis factor‐α (82.6 ± 78.6 pg/mL vs. 2.3 ± 0.5 pg/mL) were associated with neonates that died within 1 week of birth. Even though we did not detect a direct relation between winter severity and birth or blood characteristics of neonates, evidence suggests that birth‐mass and key serum indices of neonate nutrition were associated with their early mortality. Thus, managers can make more informed predictions regarding survival and cause‐specific mortality of fawns and adjust management strategies to better control deer population goals.
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