During the acute phase response (APR), cytokines induce marked alterations in lipid metabolism including an increase in serum triglycerides, a decrease in hepatic fatty acid oxidation, a decrease in bile acid synthesis, and a decrease in HDL. Here we demonstrate that TNF and IL-1, but not IL-6, decrease the expression of RXRα, PPARα, PPARγ, LXRα and coactivators PGC-1α, PGC-1β and SRC-1 in Hep3B human hepatoma cells. Additionally, treatment of mice with TNF and IL-1 also decreased RXRα, PPARα, PPARγ, LXRα, and PGC-1α mRNA levels in the liver. These decreases were accompanied by reduced binding of nuclear extracts to RXR, PPAR, and LXR response elements and decreased luciferase activity driven by PPAR and LXR response elements. In addition, the mRNA levels of proteins regulated by PPARα (CPT 1α) and LXR (SREBP-1c) were decreased in Hep 3B cells treated with TNF or IL-1. Finally, using constructs of the LXRα promoter or the PGC-1α promoter linked to luciferase we were able to demonstrate that a decrease in transcription contributes to the reduction in mRNA levels of nuclear hormone receptors and coactivators. Thus, our results suggest that decreased expression of nuclear hormone receptors RXRα, PPARα, PPARγ, and LXRα, as well as coactivators PGC-1α, PGC-1β, and SRC-1 may contribute to the cytokine induced alterations in hepatic lipid metabolism during the APR.