Striped Bass, Morone saxatilis (Walbaum, 1792), is an anadromous fish species that supports fisheries throughout North America and is native to the North American Atlantic Coast. Due to long coastal migrations that span multiple jurisdictions, a detailed understanding of population genomics is required to untangle demographic patterns, understand local adaptation, and characterize population movements. This study used 1,256 single nucleotide polymorphism (SNP) loci to investigate genetic structure of 477 Striped Bass sampled from 15 locations spanning the North American Atlantic coast from the Gulf of St. Lawrence, Canada, to the Cape Fear River, United States. We found striking differences in neutral divergence among Canadian sites, which were isolated from each other and US populations, compared with US populations that were much less isolated. Our SNP dataset was able to assign 99% of Striped Bass back to six reporting groups, a 39% improvement over previous genetic markers. Using this method, we found (a) evidence of admixture within Saint John River, indicating that migrants from the United States and from Shubenacadie River occasionally spawn in the Saint John River; (b) Striped Bass collected in the Mira River, Cape Breton, Canada, were found to be of both Miramichi River and US origin; (c) juveniles in the newly restored Kennebec River population had small and nonsignificant differences from the Hudson River; and (d) tributaries within the Chesapeake Bay showed a mixture of homogeny and small differences among each other. This study introduces new hypotheses about the dynamic zoogeography of Striped Bass at its northern range and has important implications for the local and international management of this species.
Barriers such as dams have been cited as a serious threat to striped bass survival, especially when they affect or impede migration and access to spawning grounds. On the Saint John River, New Brunswick, the installation of the large Mactaquac Dam in the immediate vicinity of a historic striped bass spawning location was suspected to have caused the arrest of striped bass reproduction and the collapse of the native striped bass population. In 2014, juvenile striped bass of confirmed Saint John River origin were documented in the river for the first time since 1979. In the current study, we examined juveniles from 6 years of sampling to determine corresponding years of successful recruitment. We also tracked adult striped bass matching the ancestry of native Saint John River juveniles to determine the timing and location of spawning. Over 5 years, we observed an annual upstream migration by adult striped bass to historic spawning areas near Fredericton, identified a dominant year class of Saint John River origin juveniles reproduced in 2013, and linked the apparent successful production of year classes to definable discharge conditions, that is, extended periods of sustained flow >36 hr downstream from the Mactaquac Dam. The results of this study suggest important first management actions towards recovering and sustaining the re‐discovered striped bass population in the Saint John River, New Brunswick.
Sound management of a species requires, among other things, careful consideration of their distribution and genetic structure throughout their range. Historically, there were three spawning populations of Striped Bass Morone saxatilis occurring within the Bay of Fundy, Canada (Shubenacadie River, Annapolis River, and Saint John River), but today the only known spawning population is found in the Shubenacadie River, Nova Scotia. The last spawning event recorded (albeit unsuccessful) in the Saint John River was in 1975 shortly after the completion of the Mactaquac Dam in 1968. Adult Striped Bass from other rivers frequent the Saint John River during much of the year, making the presence of adults uninformative about the status of spawning. In the absence of direct indicators of spawning, such as eggs and larvae, genomic tools can provide insight into the genetic origin of the juvenile Striped Bass in the Saint John River. Tissue samples were taken from Striped Bass (ages 1-3; 12.2-35.0 cm TL) captured in the Saint John River and compared with samples from the Shubenacadie River, Hudson River, and Chesapeake Bay. A doubledigest RAD-seq technique was used to identify 4,700 single nucleotide polymorphisms, and population structure was assessed using population differentiation statistics (F ST ) and genetic clustering algorithms. The F ST analysis found significant differences among all sample sites, albeit weak differences between Hudson River and Chesapeake Bay samples, and a global F ST of 0.101. Genetic clustering analyses and discriminant analysis of principle components both grouped samples into three clusters: the Shubenacadie River, the U.S. populations, and the Saint John River juveniles. Based on these findings and the current understanding of Striped Bass juvenile dispersal, there is strong evidence of a genetically distinct population of Striped Bass within the Saint John River. 1340 LEBLANC ET AL.
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