The article discusses the effectiveness and different areas of using innovative navigation systems for transport, different markets and participation in international transport projects. The problems of ensuring information security in the operation of navigation systems in different markets and innovative activities in integrated industrial structures are considered by the example of clusters involving enterprises of the defense industry complex. It is emphasized that the analysis of market opportunities for the use of innovative navigation systems on the transport of defense enterprises allows solving several tasks at once: improving transport systems, developing dual-use technologies, presenting Russian innovation on the international market and so on. Particular attention is paid to the analysis of the possibility of using innovative navigation systems in foreign markets, as well as in the creation of transnational transport routes. The most promising markets can be considered the market of China and Kazakhstan.