Taxonom ic relationships of the

This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.Page 1 not detected in any of the samples. BRSV was detected in diseased calves in two herds but not in 35 the clinically healthy animals. Among the diseased calves in these two herds a significant increase 36 in haptoglobin and serum amyloid A levels was observed compared to the healthy calves. The 37 results indicate, that haptoglobin might be the best choice for detecting disease under field 38 conditions. For H. somni and M. haemolytica, a higher percentage of the samples were found 39 positive by PCR than by cultivation, whereas the opposite result was found for P. multocida. 40Detection of P. multocida by PCR or cultivation was found to be significantly associated with the 41 disease status of the calves. For H. somni a similar association with disease status was only 42 observed for cultivation and not for PCR. 43 44

iHaemophilus parasuis causes Glässer's disease and pneumonia in pigs. Indirect hemagglutination (IHA) is typically used to serotype this bacterium, distinguishing 15 serovars with some nontypeable isolates. The capsule loci of the 15 reference strains have been annotated, and significant genetic variation was identified between serovars, with the exception of serovars 5 and 12. A capsule locus and in silico serovar were identified for all but two nontypeable isolates in our collection of >200 isolates. Here, we describe the development of a multiplex PCR, based on variation within the capsule loci of the 15 serovars of H. parasuis, for rapid molecular serotyping. The multiplex PCR (mPCR) distinguished between all previously described serovars except 5 and 12, which were detected by the same pair of primers. The detection limit of the mPCR was 4.29 ؋ 10 5 ng/l bacterial genomic DNA, and high specificity was indicated by the absence of reactivity against closely related commensal Pasteurellaceae and other bacterial pathogens of pigs. A subset of 150 isolates from a previously sequenced H. parasuis collection was used to validate the mPCR with 100% accuracy compared to the in silico results. In addition, the two in silico-nontypeable isolates were typeable using the mPCR. A further 84 isolates were analyzed by mPCR and compared to the IHA serotyping results with 90% concordance (excluding those that were nontypeable by IHA). The mPCR was faster, more sensitive, and more specific than IHA, enabling the differentiation of 14 of the 15 serovars of H. parasuis. Haemophilus parasuis is a Gram-negative bacterium commonly found in the upper respiratory tract of the pig, and it was identified in 1910 as the causative agent of a globally prevalent systemic disease of pigs known as Glässer's disease. The more severe presentations of this disease include arthritis, meningitis, polyserositis, septicemia, and pneumonia (1-5). Based on statistics from the United States, H. parasuis is the leading cause of mortality (alongside the porcine reproductive and respiratory syndrome [PRRS] virus) in nursery herds, and it is the third most important bacterial pathogen affecting finisher herds (6). H. parasuis also contributes to a multifactorial porcine respiratory disease complex, the leading cause of mortality in grower-finisher pigs in the United States (7). Diagnostic submissions to veterinary investigation centers of the Animal and Plant Health Agency (APHA) in 2013 and 2014 recorded the highest annual rates of diagnosis of disease incidents due to H. parasuis in England and Wales since 2002 (8, 9). In the third quarter of 2013, the diagnostic rate reached nearly 8% of diagnosable submissions (8,9). This disease characteristically manifests postweaning and is associated with the loss of maternally derived antibodies and the endemic presence of the bacterium in herds (1, 5).Treatment and prevention of Glässer's disease are implemented via strategic delivery of penicillin-based antimicrobials in feed or water. Ongoing treatment may be...

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