Sequences from two mitochondrial genes (cytochrome b and NADH1) were used to produce a molecular phylogeny for 12 named and two undescribed species of the genus Oligoryzomys. All analyses placed Oligoryzomys microtis as the most basal taxon, a finding consistent with previous studies that suggested the west-central Amazon as a centre of origin for the tribe Oryzomyini to which Oligoryzomys belongs. Biogeographically, this suggests that Oligoryzomys had a South American origin, and later advanced northwards, entering Central America and Mexico more recently. Different analyses have provided consistent support for several additional clades that did not necessarily agree with the species groups hypothesized by previous studies. A molecular clock derived for these data suggests an origin for the genus of 6.67 Mya, with most speciation within the genus occurring between 3.7 and 1.5 Mya.

Aim Biodiversity losses under the species level may have been severely underestimated in future global climate change scenarios. Therefore, it is important to characterize the diversity units at this level, as well as to understand their ecological responses to climatic forcings. We have chosen an endemic rodent from a highly endangered ecogeographic area as a model to look for distributional responses below the species level: Phyllotis darwini. Location The central Chile biodiversity hotspot: This area harbours a high number of endemic species, and it is known to have experienced vegetational displacements between two mountain systems during and after the Last Glacial Maximum. Methods We have characterized cryptic lineages inside P. darwini in a classic phylogeographic approach; those intraspecific lineages were considered as relevant units to construct distribution models at Last Glacial Maximum and at present, as border climatic conditions. Differences in distribution between border conditions for each lineage were interpreted as distributional responses to post-glacial climate change. Results The species is composed of two major phylogroups: one of them has a broad distribution mainly across the valley but also in mountain ranges, whereas the other displays a disjunct distribution across both mountain ranges and always above 1500 m. The lineage distribution model under LGM climatic conditions suggests that both lineages were co-distributed in the southern portion of P. darwini’s current geographic range, mainly at the valley and at the coast. Main conclusions Present distribution of lineages in P. darwini is the consequence of a cryptic distributional response to climate change after LGM: postglacial northward colonization, with strict altitudinal segregation of both phylogroups.

Background: Current knowledge of urban bird ecology and biodiversity relies on evidence from cities of the Northern Hemisphere, while the Southern Hemisphere is underrepresented. Santiago is a large city from South America, located in central Chile, which is both a biodiversity hotspot and an Endemic Bird Area. This work is a synthesis, which aims to provide a diversity account for Santiago, and to describe the broad geographic distribution and bird functional patterns. Methods:We synthesized a seven-year (2009)(2010)(2011)(2012)(2013)(2014)(2015)(2016) bird register from the eBird database (21,865 georeferenced registers at Santiago) into a single avifaunal account, along with the observed number of individuals. We complemented these registers by using available literature about Santiago's avifauna (28 references). We investigated the proportion of native/ exotic, migrants/residents, conservation categories, and urban nesting status. We classified Santiago's birds into seven trophic guilds. We plotted species richness and number of individuals for each functional group, by interpolating trough the Inverse Distance Weighted Method. Results:We found that Santiago's avifauna (46 species) is composed mainly by native (41), resident (38), non-threatened species (46) that breed inside the city (31). Some functional groups inhabit a large portion of Santiago's urban surface, reaching high values of richness and abundance. Among these groups are the native, urban-nesters and resident species; even though exotics possess low species richness (5), they are abundant and inhabit the complete urban surface of the city. The dominant trophic guilds are omnivorous (11) and granivorous (10). Insectivorous are the third most abundant trophic guild, and show the highest species richness (13). Conclusion:The functional groups with lower species richness are less abundant and display reduced and patchy distributions in Santiago. This is probably because of the low availability of suitable habitats and/or restricted food supply (migrants, carnivorous, nectarivorous, frugivorous, herbivorous and piscivorous). The high insectivorous richness reported in Santiago, along with similar patterns reported in several cities in the Neotropics, provides evidence to postulate a pattern of high species richness of this guild in cities across this biogeographic realm.

We evaluated if two sigmodontine rodent taxa (Abrothrix olivacea and Phyllotis darwini) from the Andes and Coastal mountaintops of central Chile, experienced distributional shifts due to altitudinal movements of habitat and climate change during and after the Last Glacial Maximum (LGM). We tested the hypothesis that during LGM populations of both species experienced altitudinal shifts from the Andes to the lowlands and the coastal Cordillera, and then range retractions during interglacial towards higher elevations in the Andes. These distributional shifts may have left remnants populations on the mountaintops. We evaluated the occurrence of intraspecific lineages for each species, to construct distribution models at LGM and at present, as extreme climatic conditions for each lineage. Differences in distribution between extreme climatic conditions were interpreted as post-glacial distributional shifts. Abrothrix olivacea displayed a lineage with shared sequences between both mountain systems, whereas a second lineage was restricted to the Andes. A similar scenario of panmictic unit in the past was recovered for A. olivacea in the Andes, along with an additional unit that included localities from the rest of its distribution. For P. darwini, both lineages recovered were distributed in coastal and Andean mountain ranges at present as well, and structuring analyses for this species recovered coastal and Andean localities as panmictic units in the past. Niche modeling depicted differential postglacial expansions in the recovered lineages. Results suggest that historical events such as LGM triggered the descending of populations to Andean refuge areas (one of the A. olivacea’s lineages), to the lowlands, and to the coastal Cordillera. Backward movements of populations after glacial retreats may have left isolates on mountaintops of the coastal Cordillera, suggesting that current species distribution would be the outcome of climate change and habitat reconfiguration after LGM.

Seed dispersal by endozoochory is an important mechanism promoting the spread of exotic fleshy-fruit plants. Although the invasiveness of glossy privet (Ligustrum lucidum W.T. Aiton) in several regions has been associated with the presence of disperser birds, only a few studies have examined their seed germination after dispersal. In Central Chile, the privet grown is an ornamental species, but to date, it has not been observed to settle in natural or seminatural habitats. In Santiago city, the fruits of glossy privet are mainly consumed by the austral thrush (Turdus falcklandii Quoy & Gaimard), which could act as dispersers of their seeds. For this reason, we analyzed the role of endozoochory by the austral thrushes on the germination of glossy privet. We collected seeds from trees and feces of austral thrushes, and then we compared their viabilities and germination percentages. Viability was established using the tetrazolium test, while germination was studied using a factorial experiment (10 seeds in Petri dishes, replicated nine times for both sources). Our results showed that the germination of seeds from feces (58.3 %) was 12 % lower than those from trees (77.7 %), indicating that austral thrushes reduces significantly the germination percentage of the glossy privet. The viabilities of seeds from fruits and feces were 100 %. Because these values may be high enough to allow the population establishment, we suggest that further studies are necessary to examine the role of the endozoochory in the (unsuccessful) spread of the glossy privet in Chile.