Grid computing is distributed computing performed transparently across multiple administrative domains. Grid middleware, which is meant to enable access to grid resources, is currently widely seen as being too heavyweight and, in consequence, unwieldy for general scientific use. Its heavyweight nature, especially on the clientside, has severely restricted the uptake of grid technology by computational scientists. In this paper, we describe the Application Hosting Environment (AHE) which we have developed to address some of these problems. The AHE is a lightweight, easily deployable environment designed to allow the scientist to quickly and easily run legacy applications on distributed grid resources. It provides a higher level abstraction of a grid than is offered by existing grid middleware schemes such as the Globus Toolkit. As a result the computational scientist does not need to know the details of any particular underlying grid middleware and is isolated from any changes to it on the distributed resources. The functionality provided by the AHE is 'application-centric': applications are exposed as web services with a well-defined standards-compliant interface. This allows the computational scientist to start and manage application instances on a grid in a transparent manner, thus greatly simplifying the user experience. We describe how a range of computational science codes have been hosted within the AHE and how the design of the AHE allows us to implement complex workflows for deployment on grid infrastructure.
We use a kinetic lattice-Boltzmann method to simulate the self-assembly of the cubic primitive (P), diamond (D), and gyroid (G) mesophases from an initial quench composed of oil, water, and amphiphilic particles. Here, we also report the self-assembly of the noncubic hexagonal phase and two lamellar phases, one with periodic convolutions. The periodic mesophase structures are emergent from the underlying conservation laws and quasi-molecular interactions of the lattice-Boltzmann model. We locate regions of the model's parameter space where the sequence of appearance of mesophases lamellar --> primitive --> hexagonal is in agreement with pressure jump experiments and the sequence cubic --> lamellar is in agreement with compositional variations reported in the literature. The ability of our lattice-Boltzmann model to simulate self-assembly of cubic and noncubic phases in a unified and consistent manner opens the way for further investigations into the transition pathways and kinetics of the phase transitions between these states as well as of the rheology of these phases.
We describe computational science research that uses petascale resources to achieve scientific results at unprecedented scales and resolution. The applications span a wide range of domains, from investigation of fundamental problems in turbulence through computational materials science research to biomedical applications at the forefront of HIV/AIDS research and cerebrovascular haemodynamics. This work was mainly performed on the US TeraGrid 'petascale' resource, Ranger, at Texas Advanced Computing Center, in the first half of 2008 when it was the largest computing system in the world available for open scientific research. We have sought to use this petascale supercomputer optimally across application domains and scales, exploiting the excellent parallel scaling performance found on up to at least 32 768 cores for certain of our codes in the so-called 'capability computing' category as well as highthroughput intermediate-scale jobs for ensemble simulations in the 32-512 core range. Furthermore, this activity provides evidence that conventional parallel programming with MPI should be successful at the petascale in the short to medium term. We also report on the parallel performance of some of our codes on up to 65 636 cores on the IBM Blue Gene/P system at the Argonne Leadership Computing Facility, which has recently been named the fastest supercomputer in the world for open science.
The purpose of the present paper is to report on the first computational study of the dynamical and rheological response of a self-assembled diamond mesophase under Couette flow in a ternary mixture composed of oil, water and an amphiphilic species. The amphiphilic diamond mesophase arises in a wide range of chemical and biological systems, and a knowledge of its rheological response has important implications in materials science and biotechnological applications. The simulations reported here are performed using a kinetic lattice–Boltzmann method. Lyotropic liquid crystals exhibit characteristic rheological responses in experiments that include shear-banding and a non-Newtonian flow curve as well as viscoelasticity under oscillatory shear. Their behaviour under steady and oscillatory shear is correctly reproduced in our simulations. On cessation of shear, as the morphology returns to the diamond phase, the relaxation of the stress response follows a stretched-exponential form for low initial strain rates.
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