Dogs were the first domestic animal, but little is known about their population history and to what extent it was linked to humans. We sequenced 27 ancient dog genomes and found that all dogs share a common ancestry distinct from present-day wolves, with limited gene flow from wolves since domestication but substantial dog-to-wolf gene flow. By 11,000 years ago, at least five major ancestry lineages had diversified, demonstrating a deep genetic history of dogs during the Paleolithic. Coanalysis with human genomes reveals aspects of dog population history that mirror humans, including Levant-related ancestry in Africa and early agricultural Europe. Other aspects differ, including the impacts of steppe pastoralist expansions in West and East Eurasia and a near-complete turnover of Neolithic European dog ancestry.

a b s t r a c tInterpretations of dog burials made by ancient foraging groups have tended to be based upon our own relationships with such animals and modern western cosmological and ontological concepts. Osteological studies of early dogs often focus only on issues of taxonomy, and as a result very little is known about these animals' life histories. Eastern Siberia has produced many Holocene dog burials, but these are typically not well described and the explanatory frameworks provided for them are very underdeveloped. Here we examine in detail two Cis-Baikal canid burials, one of a wolf and the other a dog, both in large Middle Holocene hunter-gatherer cemeteries. We link the mortuary treatment of these animals to other cultural practices, particularly the treatment of the human dead, and broader patterns in Northern human-animal relationships. This interpretive model is combined with detailed osteobiographies for the canids and contextual information for these and other dogs and wolves from Middle Holocene CisBaikal. It is argued that canids here were understood and treated in a variety of ways. We suggest that some animals with unique histories were known as distinct persons with 'souls' and because of this at death required mortuary rites similar to those of their human counterparts.

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