No abstract
Soil management systems cause many changes in the microenvironment that directly affect activity and diversity of microorganisms. In lowlands, there is a gap in relation to the adoption of no-tillage (zero-tillage) and the impact it has on soil under cultivation of irrigated rice. This study, an in-field experiment, evaluated the microbial enzymatic activity and diversity in an Entisol cultivated with rice under different managements for 22 years. The experiment started in the 1994/95 growing season, and the treatments were no-tillage, conventional, and pregerminated management systems. After 22 years, the data obtained on most of the evaluation dates indicated that no-tillage increased microbial biomass carbon (+45%), microbial biomass nitrogen (+54%), and basal respiration (+54%). No-tillage compared to management under soil tillage (pregerminated and conventional tillage) increased the activity of β-glucosidase (+43%), acid phosphatase (+68%), diacetate fluorescein (+34%), and urease (+96%).The enzyme activity was correlated with the soil organic carbon content and particulate fraction. Despite the relatively high enzyme activity with no-tillage, bacterial richness was maintained in this soil management system. The Proteobacteria phylum has a greater abundance in the NT (43.2%) in relation to the CT (32.3%). Bacteroidetes phylum has a lower abundance in the NT (10.0%) in relation to the CT (15.2%). The Verrucomicrobia phylum has a greater abundance in NT (8.9%) in relation to CT (4.9%). The results suggest that no-tillage is an important management tool in the recovery of irrigated rice areas whose soil has undergone microbiological degradation.
Potato (Solanum tuberosum) yield has increased dramatically over the last 50 years and this has been achieved by a combination of improved agronomy and biotechnology efforts. Gene studies are taking place to improve new qualities and develop new cultivars. Reverse transcriptase quantitative polymerase chain reaction (RT-qPCR) is a bench-marking analytical tool for gene expression analysis, but its accuracy is highly dependent on a reliable normalization strategy of an invariant reference genes. For this reason, the goal of this work was to select and validate reference genes for transcriptional analysis of edible tubers of potato. To do so, RT-qPCR primers were designed for ten genes with relatively stable expression in potato tubers as observed in RNA-Seq experiments. Primers were designed across exon boundaries to avoid genomic DNA contamination. Differences were observed in the ranking of candidate genes identified by geNorm, NormFinder and BestKeeper algorithms. The ranks determined by geNorm and NormFinder were very similar and for all samples the most stable candidates were C2, exocyst complex component sec3 (SEC3) and ATCUL3/ATCUL3A/CUL3/CUL3A (CUL3A). According to BestKeeper, the importin alpha and ubiquitin-associated/ts-n genes were the most stable. Three genes were selected as reference genes for potato edible tubers in RT-qPCR studies. The first one, called C2, was selected in common by NormFinder and geNorm, the second one is SEC3, selected by NormFinder, and the third one is CUL3A, selected by geNorm. Appropriate reference genes identified in this work will help to improve the accuracy of gene expression quantification analyses by taking into account differences that may be observed in RNA quality or reverse transcription efficiency across the samples.
It is known that Cannabis in Brazil could either originate from Paraguay or be cultivated in Brazil. While consumer markets in the North and Northeast regions are maintained by national production, the rest of the country is supplied with Cannabis from Paraguay. However, the Brazilian Federal Police (BFP) has exponentially increased the seizure number of Cannabis seeds sent by mail. For this reason, the aim of the study was to assess the 13-loci short tandem repeat (STR) multiplex system proposed by Houston et al. (2015) to evaluate the power of such markers in individualization and origin differentiation of Cannabis sativa samples seized in Brazil by the BFP. To do so, 72 Cannabis samples seized in Brazil by BFP were analyzed. The principal coordinate analysis (PCoA) and probability identity (PI) analysis were computed. Additionally, the Cannabis samples' genotypes were subjected to comparison by Kruskal-Wallis H, followed by a multiple discriminant analysis (MDA). All samples analyzed revealed a distinct genetic profile. PCoA clearly discriminated the seizure sets based on their geographic origin. A combination of seven loci was enough to differentiate samples' genotypes, and the PI for a random sample is approximately one in 50 billion. The Cannabis samples were 100% correct as classified by Kruskal-Wallis H, followed by an MDA. The results of this study demonstrate that the 13-loci STR multiplex system successfully achieved the aim of sample individualization and origin differentiation and suggest that it could be a useful tool to help BFP intelligence in tracing back-trade routes.
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