Background
Atrial fibrillation (AF) is one of the most prevalent sustained arrhythmias, however, epidemiological data may understate its actual prevalence. Meanwhile, AF is considered to be a major cause of ischemic strokes due to irregular heart-rhythm, coexisting chronic vascular inflammation, and renal insufficiency, and blood stasis. We studied co-expressed genes to understand relationships between atrial fibrillation (AF) and stroke and reveal potential biomarkers and therapeutic targets of AF-related stroke.
Methods
AF-and stroke-related differentially expressed genes (DEGs) were identified via bioinformatic analysis Gene Expression Omnibus (GEO) datasets GSE79768 and GSE58294, respectively. Subsequently, extensive target prediction and network analyses methods were used to assess protein–protein interaction (PPI) networks, Gene Ontology (GO) terms and pathway enrichment for DEGs, and co-expressed DEGs coupled with corresponding predicted miRNAs involved in AF and stroke were assessed as well.
Results
We identified 489, 265, 518, and 592 DEGs in left atrial specimens and cardioembolic stroke blood samples at < 3, 5, and 24 h, respectively.
LRRK2
,
CALM1
,
CXCR4
,
TLR4
,
CTNNB1
, and
CXCR2
may be implicated in AF and the hub-genes of
CD19
,
FGF9
,
SOX9
,
GNGT1
, and
NOG
may be associated with stroke. Finally, co-expressed DEGs of
ZNF566
,
PDZK1IP1
,
ZFHX3
, and
PITX2
coupled with corresponding predicted miRNAs, especially miR-27a-3p, miR-27b-3p, and miR-494-3p may be significantly associated with AF-related stroke.
Conclusion
AF and stroke are related and
ZNF566
,
PDZK1IP1
,
ZFHX3
, and
PITX2
genes are significantly associated with novel biomarkers involved in AF-related stroke.
Electronic supplementary material
The online version of this article (10.1186/s12967-019-1790-x) contains supplementary material, which is available to authorized users.