Changes in messenger ribonucleic acid (mRNA) populations during embryogenesis of cottonseed have been followed by cataloging (a) extant proteins, (b) proteins synthesized in vivo, and (c) proteins synthesized in vitro from extracted RNA, all at specific stages of embryogenesis. Evidence is presented for the existence of five mRNA subsets, all apparently under different regulatory regimes, that produce the abundant proteins of embryogenesis. One of these functions principally during the cell division phase of embryogenesis and encodes among its products the seed storage proteins whose mRNA is superabundant during this period. This subset has disappeared from the abundant group by the mature seed stage. Two other subsets appear in late embryogenesis, one of which may result from the removal of the embryo from the maternal environment, since it is inducible by excision of the young embryo from the seed. The other appears to be induced by the plant growth regulator abscisic acid, whose endogenous concentration increases at this stage. It can be induced by incubating excised young embryos in abscisic acid. The last two subsets exist throughout embryogenesis, but only one of them appears to function in germination.

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The RNA content of pea cotyledons shows little change during the first five days of germination at 22°C. From day five onwards there is a rapid net degradation of RNA, which continues until day thirteen. The DNA content of the cotyledons increases slightly during the first nine days of germination, after which there is a net decrease. Acid and alkaline ribonuclease activities increase markedly between day one and day five, and then decline between day five and day nine. There is a second increase in the activities of both enzymes from day nine onwards. Soluble deoxyribonuclease activity exhibits a single peak, seven days after the onset of germination. The first increase in acid ribonuclease activity is only partially inhibited by cycloheximide at concentrations which severely inhibit protein synthesis.

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Synthesis of both protein and RNA is initiated very early in germination in the embryo axes of pea seeds. The early RNA synthesis involves all three types, although there is some evidence for preferential synthesis of mRNA in the first few hours after the onset of imbibition. In addition to newly synthesized mRNA, the embryo axis also contains long-lived mRNA. The amount of this long-lived mRNA declines markedly during the first 20 h of germination.Results from in vitro and in vivo protein synthesis experiments and from studies of polysome formation suggest that much of the long-lived mRNA present in the embryo axis does not direct protein synthesis. The increase in the rate of protein synthesis during germination is thus dependent on recruitment of newly synthesized mRNA molecules.