Close‐range photogrammetry (CRP) is a well‐established technique to retrieve quantitative information from objects using photography. CRP is often used in morphology studies when the direct handling of individuals is unpractical or unethical, or to reduce processing costs and time. Although multiple software to extract quantitative information from 3D reconstructions of objects exist, tools for 2D CRP are scarce and often tailored for specific applications. We present AragoJ, a cross‐platform, open‐source, Java based software designed to integrate and streamline all 2D CRP workflow steps in a single program. AragoJ allows the user to perform all the main tasks involved in obtaining measurements from digital pictures, namely: (1) performing camera calibration and correcting radial picture distortions; (2) calculating a scaling factor either by: (a) utilizing a scale in the picture, or (b) based on camera specifications (focal distance and digital sensor size) and distance to object; (3) measuring and scaling the relevant traits in the photographs; (4) obtaining information from pictures’ digital metadata files; and (5) exporting measurements and metadata to a comma separated values file. AragoJ was designed to be versatile and unconstrained, in order to be useful for 2D CRP studies across multiple disciplines. The software, source code and detailed documentation are available from https://github.com/AzWhaleLab/AragoJ.
Ship strikes are a widespread conservation issue for many cetacean species globally. Population level impacts depend on the occurrence and severity of collisions, which may lead to life altering injuries or fatalities. Such impacts are a major concern for large, long-lived, and reproductively slow species like the fin whale. Since 2014, a seasonal feeding aggregation of fin whales has been monitored from February to June off the Catalan coast (Spain), in the northwest Mediterranean Sea. Oceanographical factors influence the occurrence and high density of krill within submarine canyons along the continental shelf, resulting in high whale abundance within a small spatial area. The study area extends 37 km offshore across a 1,944 km2 marine strip situated between the towns of Torredembarra and Castelldefels. This fin whale feeding ground is exposed to high density marine vessel traffic, given its location between the northern Mediterranean shipping lane, which links Barcelona and Tarragona Ports to the Atlantic Ocean and wider Mediterranean Basin. Ship strikes represent the greatest conservation threat for fin whales in the Mediterranean Sea. At least four fin whales have been found dead in Barcelona Port since 1986 due to ship strikes and seven live whales have been documented with injuries in the study area since 2018. Fin whale distribution was mapped with known high-risk marine vessels’ (cargo, tanker and passenger vessels) shipping lanes. Vessel density and shipping lanes characterised by speed were considered. Collision risk was estimated monthly based on the predicted fin whale occurrence and traffic density. Several shipping lanes crossed the fin whale feeding habitat every month with an average speed of 15 kn. Cargo vessels displayed the highest ship-strike risk during April, overlapping with the peak of fin whale sightings in the critical feeding area. Slower vessel speeds (8 kn) in waters <200 m depth or along the continental shelf should be implemented along the Catalan coast, during the whale season. These suggestions should be applied into the Barcelona Port transport separation scheme. Ship strike risk for this species will persist unless active management plans are adapted in the region to mitigate its risk.
Drones have become a crucial research tool across marine environments over the past decade, being specifically useful in marine mammal research. Fin whales (Balaenoptera physalus) have been monitored feeding along the Catalan coast, Spain (NW Mediterranean), since 2014. To overcome issues such as the distance between a whale and a research vessel or the lack of distinctive dorsal fin features, an aerial identification technique was developed. It uses the fin whales’ characteristic central chevron pattern (CCP) and blaze, which are clearly visible from an overhead position. A total of 237 individual whales were identified between 2015–2022 in this study area, of which there were 35 interannual recaptures. While the dorsal fin may undergo modifications over time, the CCP and blaze patterns did not naturally alter over the years, with one whale displaying the same characteristics 8 years apart between the first and the most recent sightings. As such, this coloration pattern provides a reliable identification feature to be used for the interannual identification and population monitoring of fin whales using drones. This novel technique aims to improve and unify this species cataloguing overseas by using the CCP and blaze obtained from UAV (unmanned aerial vehicle) zenithal videos as a robust identification tool.
Three male sperm whales (Physeter macrocephalus) stranded on the island of Andøya in northern Norway in 2020. This created an opportunity to do gross necropsies with a focus on stomach contents as the diet of sperm whales in Norwegian waters is poorly understood and also to study potential presence of marine debris. Four new prey types for sperm whales in Norwegian waters were identified: (1) angler fish, (2) Atlantic cod, (3) cartilaginous fish, and (4) cock-eyed squid. In general, the results support earlier studies of male sperm whale diet in high latitude foraging grounds in the North Atlantic consisting of a mixture of cephalopods and meso- and bathypelagic fish. The only type of marine debris found was part of a fishing line. Based on estimates from teeth, the whales were 25, 45, and 49 years old. The size of all individuals was smaller than the median length based on whaling data for these age classes caught in Iceland in the 1970s.
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