The genome of Azoarcus olearius DQS-4 , a N -fixing Betaproteobacterium isolated from oil-contaminated soil in Taiwan, was sequenced and compared with other Azoarcus strains. The genome sequence showed high synteny with Azoarcus sp. BH72, a model endophytic diazotroph, but low synteny with five non-plant-associated strains (Azoarcus CIB, Azoarcus EBN1, Azoarcus KH32C, A. toluclasticus MF63 and Azoarcus PA01). Average Nucleotide Identity (ANI) revealed that DQS-4 shares 98.98% identity with Azoarcus BH72, which should now be included in the species A. olearius. The genome of DQS-4 contained several genes related to plant colonization and plant growth promotion, such as nitrogen fixation, plant adhesion and root surface colonization. In accordance with the presence of these genes, DQS-4 colonized rice (Oryza sativa) and Setaria viridis, where it was observed within the intercellular spaces and aerenchyma mainly of the roots. Although they promote the growth of grasses, the mechanism(s) of plant growth promotion by A. olearius strains is unknown, as the genomes of DQS-4 and BH72 do not contain genes for indole acetic acid (IAA) synthesis nor phosphate solubilization. In spite of its original source, both the genome and behaviour of DQS-4 suggest that it has the capacity to be an endophytic, nitrogen-fixing plant growth-promoting bacterium.
A slightly thermophilic bacterial strain, designated AT-A2 T , was isolated from a hot spring water sample taken from the Antun hot spring in Taiwan and characterized using a polyphasic taxonomic approach. Cells of strain AT-A2 T were aerobic, Gram-negative, motile by a single polar flagellum and formed non-pigmented colonies. Growth occurred at 35-60 6C (optimum, 55 6C), with 0-1.0 % NaCl (optimum, 0.2 %) and at pH 7.0-9.0 (optimum, pH 7.0). Phylogenetic analyses based on 16S rRNA gene sequences showed that strain AT-A2 T belonged to the genus Tepidimonas and its closest neighbour was Tepidimonas thermarum AA-1 T with a sequence similarity of 97.5 %. The predominant cellular fatty acids were C 16 : 0 (40.2 %), summed feature 3 (C 16 : 1 v7c and/or C 16 : 1 v6c; 20.1 %) and C 17 : 0 cyclo (11.5 %). The major respiratory quinone was Q-8. The polar lipid profile consisted of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an uncharacterized aminolipid and several uncharacterized phospholipids. The DNA G+C content of strain AT-A2 T was 70.1 mol%. The mean level of DNA-DNA relatedness between strain AT-A2 T and Tepidimonas thermarum AA-1 T was 23.9 %. On the basis of the phylogenetic and phenotypic data, strain AT-A2 T should be classified as representing a novel species, for which the name Tepidimonas fonticaldi sp. nov. is proposed. The type strain is
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