Dam construction has serious consequences for aquatic ecosystems, and one of the most serious is the “barrier effect,” the prevention of organism migration throughout a system. We assessed the effect of habitat fragmentation by damming on the population persistence of a stream‐dwelling fish, the white‐spotted charr (Salvelinus leucomaenis), in streams of southwestern Hokkaido, Japan. We sampled for charr at 52 dammed‐off sites by electrofishing or snorkeling and measured five habitat characteristics: isolation period, watershed area, gradient, elevation, distance from sea. Of the 52 study sites above dams, white‐spotted charr were absent at 17 sites and were present at 35 sites. Because the charr occupied all undammed upstream reaches, the damming would cause the absence of charr upstream. Among five habitat characteristics examined, stepwise logistic‐regression analysis showed that disappearance was promoted with increasing isolation period, with decreasing watershed area (i.e., habitat size), and with decreasing gradient. The resulting logistic model explained 82.7% of the present white‐spotted charr occurrence and forecasted that 12 of 35 extant populations will disappear after 50 years. Our findings imply that extirpation of small, dammed‐off populations is inevitable unless efficient fish ladders are installed or dams are removed.

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Isolation by distance is usually tested by the correlation of genetic and geographic distances separating all pairwise populations' combinations. However, this method can be significantly biased by only a few highly diverged populations and lose the information of individual population. To detect outlier populations and investigate the relative strengths of gene flow and genetic drift for each population, we propose a decomposed pairwise regression analysis. This analysis was applied to the well-described one-dimensional stepping-stone system of stream-dwelling Dolly Varden charr (Salvelinus malma). When genetic and geographic distances were plotted for all pairs of 17 tributary populations, the correlation was significant but weak (r(2) = 0.184). Seven outlier populations were determined based on the systematic bias of the regression residuals, followed by Akaike's information criteria. The best model, 10 populations included, showed a strong pattern of isolation by distance (r(2) = 0.758), suggesting equilibrium between gene flow and genetic drift in these populations. Each outlier population was also analysed by plotting pairwise genetic and geographic distances against the 10 nonoutlier populations, and categorized into one of the three patterns: strong genetic drift, genetic drift with a limited gene flow and a high level of gene flow. These classifications were generally consistent with a priori predictions for each population (physical barrier, population size, anthropogenic impacts). Combined the genetic analysis with field observations, Dolly Varden in this river appeared to form a mainland-island or source-sink metapopulation structure. The generality of the method will merit many types of spatial genetic analyses.

We review the ecology and conservation of three lesser‐known chars (genus Salvelinus): Dolly Varden (S. malma), white‐spotted char (S. leucomaenis), and bull trout (S. confluentus). Dolly Varden is distributed across the northern Pacific Rim and co‐occurs with bull trout and white‐spotted char at the southern extremes of its range. In contrast, bull trout and white‐spotted char are naturally isolated, with the former restricted to North America and the latter distributed in northeastern Asia. Though the range of Dolly Varden overlaps with the two other chars, it is most closely related to Arctic char (S. alpinus), whereas bull trout and white‐spotted char are sister taxa. Each species exhibits diverse life histories with respect to demographic characteristics, trophic ecology, and movement. This diversity appears to be tied to environmental variability (e.g., temperature, habitat connectivity), resource availability (e.g., food), and species interactions. Increasingly, these interactions involve nonnative species including nonnative salmonines and changes in food webs related to establishment of species such as Mysis shrimp in large lakes. As humans expand into the remote and pristine habitats that support these three chars, we encourage proactive consideration of the lessons learned where chars have already declined and internationally‐based research and conservation.

Dam construction has serious consequences for anadromous fishes. We examined the effects of migration barriers formed following dam construction on the migratory behavior of white-spotted char (Salvelinus leucomaenis) by comparing migrants in accessible below-dam river sections with migrants in inaccessible above-dam river sections. The frequency of smolts (i.e., potential migrant) was higher for the below-dam sections than for the above-dam sections, and in contrast, the frequency of residents was higher for the above-dam sections. Above-dam sections had lower fry (age 0+) densities and consequently had higher growth rates compared with below-dam sections. A transplant experiment revealed that the majority of the below-dam fish adopted a resident strategy, as well as above-dam fish, when both had experienced the above-dam environment. We conclude that high growth as a result of low density promotes residency in the above-dam sections.