The thermodynamically stable metal organic framework UiO-66-NH2 has experimentally been demonstrated as an ideal platform to isolate metal clusters within its nanocages; however, the electronic structures and the dynamics of the encapsulated metal clusters are still unclear. Ab initio molecular dynamics simulations combined with density functional theory-based methods were employed to search the stable structures of Pd n @UiO-66-NH2 composites, and their electronic properties were analyzed in detail. We found that the thermodynamics of the composites are highly correlated with charge transfer between the Pd n cluster and the UiO-66-NH2 framework, as well as the deformation energy of the framework. In addition, both ab initio molecular dynamics simulations and density functional theory calculations show that the small Pd clusters can easily diffuse into the tetrahedral cage of UiO-66-NH2 from the octahedral cage through the window connecting these two types of cages, with a small energy barrier.

The interaction between graphene oxide (GO) and DNA is very sensitive to the environment. For example, under acidic conditions, the affinity of GO for DNA is enhanced, weakening the capability of GO to distinguish DNAs with different conformations. This effect has impeded the development of sensitive pH biosensors based on GO-DNA nanosystems. In this work, we systematically studied the affinity between GO and i-motif forming oligonucleotides (IFOs) at different pH values and developed a herring sperm DNA (HSD) treatment method. Using this method, HSD occupies the surface of GO, compromising the attractive force of GO that is significantly enhanced under acidic conditions. As a result, the ability of GO to distinguish between "open" and "closed" IFOs is successfully generalized to a wider pH range. Finally, a pH-sensitive GO-IFO nanosystem was fabricated that showed excellent sensing ability both in vitro and for intracellular pH detection. Because the interaction between GO and DNA is the basis for constructing GO-DNA biosensors, the strategy developed in this work shows great potential to be applied in a variety of other GO-DNA sensing systems.

The design of a nano-system for the detection of intracellular microRNAs is challenging as it must fulfill complex requirements, i.e., it must have a high sensitivity to determine the dynamic expression level, a good reliability for multiplex and simultaneous detection, and a satisfactory biostability to work in biological environments. Instead of employing a commonly used physisorption or a full-conjugation strategy, here, a GO-DNA nano-system was developed under graft/base-pairing construction. The common anchor sequence was chemically grafted to GO to base-pair with various microRNA probes; and the hybridization with miRNAs drives the dyes on the probes to leave away from GO, resulting in "turned-on" fluorescence. This strategy not only simplifies the synthesis but also efficiently balances the loading yields of different probes. Moreover, the conjugation yield of GO with a base-paired hybrid has been improved by more than two-fold compared to that of the conjugation with a single strand. We demonstrated that base-paired DNA probes could be efficiently delivered into cells along with GO and are properly stabilized by the conjugated anchor sequence. The resultant GO-DNA nano-system exhibited high stability in a complex biological environment and good resistance to nucleases, and was able to accurately discriminate various miRNAs without cross-reaction. With all of these positive features, the GO-DNA nano-system can simultaneously detect three miRNAs and monitor their dynamic expression levels.

Kaolinite/methanol intercalation composite (KMe) is a key precursor for preparing clay-based inorganic/organic hybrid materials and kaolinite nanoscrolls. However, synthesis of KMe is a time and methanol dissipative process and the complexity of this process also limits its further applications. In this study, Soxhlet extractor was introduced to synthesize an intercalation composite and KMe was efficiently synthesized in a Soxhlet extractor through a continuous displacement process by using kaolinite/DMSO intercalation composite (KD) as a precursor. The formation process of kaolinite/methanol intercalation composite was studied by X-ray diffraction (XRD) and infrared spectroscopy (IR). The results showed that the DMSO in kaolinite could be completely displaced by methanol in this process and the preparation of KMe could be completed in 8 hours, which was far faster than the reported methods. Moreover, methanol used in this process could be recycled. Furthermore, the resulting material could be successfully used to prepare kaolinite nanoscrolls in high yield.

The zeolitic imidazolate frameworks (ZIFs) are chemically and thermally stable microporous materials that are being considered as ideal supports for the uniform encapsulation of noble metal nanoparticles. Our theoretical investigations started from the adsorption of the molecular precursor Au(CO)Cl in both ZIF-8 and ZIF-90; surprisingly, pore-B, with the diameter less than 2.2 Å in the two ZIFs, dramatically expanded as an energetically most favorable site for the location of Au(CO)Cl, whereas the well-known pore-A, with a diameter of about 3.5 Å, is less favorable. Then, ab initio molecular dynamics simulations showed that the confined Au n cluster has a transition from two-dimensional to three-dimensional structures when n is larger than 12 in both ZIFs. Interestingly, the aldehyde groups in ZIF-90 were computed to be the main binding sites for Au clusters, whereas the imidazole rings were identified as the binding sites in ZIF-8. Compared to ZIF-90, the binding of Au clusters in ZIF-8 was stronger, accompanied by transfer of larger electrons from the frameworks to the confined Au clusters. Finally, the computed energy barriers for the CO oxidation using Au clusters confined in ZIFs as catalysts were found to be smaller than those for isolated Au clusters.