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We investigated the phenomenon of activity cycles in ants, taking into account the spatial structure of colonies. In our study species, Leptothorax acervorum, there are two spatially segregated groups in the nest. We developed a model that considers the two groups as coupled oscillators which can produce synchronized activity. By investigating the e¡ects of noise on the model system we predicted how the return of foragers a¡ects activity cycles in ant colonies. We tested these predictions empirically by comparing the activity of colonies under two conditions: when foragers are and are not allowed to return to the nest. The activity of the whole colony and of each group within the colony was studied using image analysis. This allowed us to reveal the spatial pattern of activity wave propagation in ant colonies for the ¢rst time.

BackgroundAlthough the overlap of transcriptional units occurs frequently in eukaryotic genomes, its evolutionary and biological significance remains largely unclear. Here we report a comparative analysis of overlaps between genes coding for well-annotated proteins in five metazoan genomes (human, mouse, zebrafish, fruit fly and worm).ResultsFor all analyzed species the observed number of overlapping genes is always lower than expected assuming functional neutrality, suggesting that gene overlap is negatively selected. The comparison to the random distribution also shows that retained overlaps do not exhibit random features: antiparallel overlaps are significantly enriched, while overlaps lying on the same strand and those involving coding sequences are highly underrepresented. We confirm that overlap is mostly species-specific and provide evidence that it frequently originates through the acquisition of terminal, non-coding exons. Finally, we show that overlapping genes tend to be significantly co-expressed in a breast cancer cDNA library obtained by 454 deep sequencing, and that different overlap types display different patterns of reciprocal expression.ConclusionOur data suggest that overlap between protein-coding genes is selected against in Metazoa. However, when retained it may be used as a species-specific mechanism for the reciprocal regulation of neighboring genes. The tendency of overlaps to involve non-coding regions of the genes leads to the speculation that the advantages achieved by an overlapping arrangement may be optimized by evolving regulatory non-coding transcripts.

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