Abstract. This study presents a model of chlorophyll and primary production in the pelagic Mediterranean Sea. A 3-D-biogeochemical model (OPATM-BFM) was adopted to explore specific system characteristics and quantify dynamics of key biogeochemical variables over a 6 yr period, from 1999 to 2004. We show that, on a basin scale, the Mediterranean Sea is characterised by a high degree of spatial and temporal variability in terms of primary production and chlorophyll concentrations. On a spatial scale, important horizontal and vertical gradients have been observed. According to the simulations over a 6 yr period, the developed model correctly simulated the climatological features of deep chlorophyll maxima and chlorophyll west-east gradients, as well as the seasonal variability in the main offshore regions that were studied. The integrated net primary production highlights north-south gradients that differ from surface net primary production gradients and illustrates the importance of resolving spatial and temporal variations to calculate basin-wide budgets and their variability. According to the model, the western Mediterranean, in particular the Alboran Sea, can be considered mesotrophic, whereas the eastern Mediterranean is oligotrophic. During summer stratified period, notable differences between surface net primary production variability and the corresponding vertically integrated production rates have been identified, suggesting that care must be taken when inferring productivity in such systems from satellite observations alone. Finally, specific simulations that were designed to explore the role of external fluxes and light penetration were performed. The subsequent results show that the effects of atmospheric and terrestrial nutrient loads on the total integrated net primary production account for less than 5 % of the its annual value, whereas an increase of 30 % in the light extinction factor impacts primary production by approximately 10 %.

This study presents a model of chlorophyll and primary production in the pelagic Mediterranean Sea. A 3-D-ecosystem model (OPATM-BFM) was adopted to explore specific system characteristics and quantify key biogeochemical variables covering a 6-yr period, from 1999 to 2004. <br><br> We show that, on a basin scale, the Mediterranean Sea is characterised by a high degree of spatial and temporal variability in terms of primary production and chlorophyll concentrations. On a spatial scale, important horizontal and vertical gradients have been observed. In particular, notable differences between surface net primary production variability and the corresponding vertically integrated production rates have been identified, suggesting that care must be taken when inferring productivity in such systems from satellite observations alone. The present study indicates that seasonal variability dominates inter-annual differences. <br><br> According to the simulations over a 6-yr period, the developed model correctly simulated the climatological features of deep chlorophyll maxima and chlorophyll west-east gradients, as well as the seasonal variability in the primary offshore regions that were studied. The integrated net primary production highlights north-south gradients that differ from surface net primary production gradients and illustrates the importance of adopting a spatial and temporal description to calculate basin-wide budgets and their variabilities. According to the model, the western Mediterranean, in particular the Alboran Sea, can be considered mesotrophic, whereas the eastern Mediterranean is oligotrophic. <br><br> Finally, specific simulations that were designed to explore the role of ecosystem boundary conditions were performed. The subsequent results show that the effects of atmospheric and terrestrial nutrient loads on the total integrated net primary production account for less than 5 % of the annual budget, whereas an increase of 30 % in the light extinction factor impacts primary production by approximately 10 %

In being at the base of the marine food web, phytoplankton is particularly important for marine ecosystem functioning (e.g., biodiversity). Strong anthropization, over-exploitation of natural resources, and climate change affect the natural amount of phytoplankton and, therefore, represent a continuous threat to the biodiversity in marine waters. In particular, a concerning risks for coastal waters is the increase in nutrient inputs of terrestrial/anthropogenic origin that can lead to undesirable modifications of phytoplankton concentration (i.e., eutrophication). Monitoring chlorophyll (Chl) concentration, which is a proxy of phytoplankton biomass, is an efficient tool for recording and understanding the response of the marine ecosystem to human pressures and thus for detecting eutrophication. Here, we compute Chl trends over the Mediterranean Sea by using satellite data, also highlighting the fact that remote sensing may represent an efficient and reliable solution to synoptically control the “good environmental status” (i.e., the Marine Directive to achieve Good Environmental Status of EU marine waters by 2020) and to assess the application of international regulations and environmental directives. Our methodology includes the use of an ad hoc regional (i.e., Mediterranean) algorithm for Chl concentration retrieval, also accounting for the difference between offshore (i.e., Case I) and coastal (i.e., Case II) waters. We apply the Mann-Kendall test and the Sens’s method for trend estimation to the Chl concentration de-seasonalized monthly time series, as obtained from the X-11 technique. We also provide a preliminary analysis of some particular trends by evaluating their associated inter-annual variability. The high spatial resolution of our approach allows a clear identification of intense trends in those coastal waters that are affected by river outflows. We do not attempt to attribute the observed trends to specific anthropogenic events. However, the trends that we document are consistent with the findings of several previous studies.

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The Gulf of Naples (Southern Tyrrhenian Sea) is a highly urbanised area, where human activities and natural factors (e.g. river runoff, exchanges with adjacent basins) can strongly affect the water quality. In this work we show how surface transport can influence the distribution of passively drifting surface matter, and more in general if and how the circulation in the basin can promote the renovation of the surface layer. To this aim, we carried out a multiplatform analysis by putting together HF radar current fields, satellite images and modelling tools. Surface current fields and satellite images of turbidity patterns were used to initialise and run model simulations of particle transport and diffusion. Model results were then examined in relation to the corresponding satellite distributions. This integrated approach permits to investigate the concurrent effects of surface dynamics and wind forcing in determining the distribution of passive tracers over the basin of interest, identifying key mechanisms supporting or preventing the renewal of surface waters as well as possible areas of aggregation and retention.