High-resolution analyses of lake sediment from southwestern Alaska reveal cyclic variations in climate and ecosystems during the Holocene. These variations occurred with periodicities similar to those of solar activity and appear to be coherent with time series of the cosmogenic nuclides 14C and 10Be as well as North Atlantic drift ice. Our results imply that small variations in solar irradiance induced pronounced cyclic changes in northern high-latitude environments. They also provide evidence that centennial-scale shifts in the Holocene climate were similar between the subpolar regions of the North Atlantic and North Pacific, possibly because of Sun-ocean-climate linkages.

Climatic warming during the last glacial–interglacial transition (LGIT) was punctuated by reversals to glacial‐like conditions. Palaeorecords of ecosystem change can help document the geographical extent of these events and improve our understanding of biotic sensitivity to climatic forcing. To reconstruct ecosystem and climatic variations during the LGIT, we analyzed lake sediments from southwestern Alaska for fossil pollen assemblages, biogenic‐silica content (BSiO2%), and organic‐carbon content (OC%). Betula shrub tundra replaced herb tundra as the dominant vegetation of the region around 13 600 cal BP (cal BP: 14C calibrated calendar years before present), as inferred from an increase of Betula pollen percentages from << 5% to >> 20% with associated decreases in Cyperaceae, Poaceae, and Artemisia. At c. 13 000 cal BP, a decrease of Betula pollen from 28 to << 5% suggests that shrub tundra reverted to herb tundra. Shrub tundra replaced herb tundra to resume as the dominant vegetation at 11 600 cal BP. Higher OC% and BSiO2% values suggest more stable soils and higher aquatic productivity during shrub‐tundra periods than during herb‐tundra periods, although pollen changes lagged behind changes in the biogeochemical indicators before c. 13 000 cal BP. Comparison of our palaeoecological data with the ice‐core dδ18O record from Greenland reveals strikingly similar patterns from the onset through the termination of the Younger Dryas (YD). This similarity supports the hypothesis that, as in the North Atlantic region, pronounced YD climatic oscillations occurred in the North Pacific region. The rapidity and magnitude of ecological changes at the termination of the YD are consistent with greenhouse experiments and historic photographs demonstrating tundra sensitivity to climatic forcing.

IntDOT is a tyrosine recombinase encoded by the conjugative transposon CTnDOT. The core binding (CB) and catalytic (CAT) domains of IntDOT interact with core-type sites adjacent to the regions of strand exchange, while the N-terminal arm binding (N) domain interacts with arm-type sites distal to the core. Previous footprinting experiments identified five arm-type sites, but how the arm-type sites participate in the integration and excision of CTnDOT was not known. In vitro integration assays with substrates containing arm-type site mutants demonstrated that attDOT sequences containing mutations in the L1 arm-type site or in the R1 and R2 or R1 and R2 arm-type sites were dramatically defective in integration. Substrates containing mutations in the L1 and R1 arm-type sites showed a 10-to 20-fold decrease in detectable in vitro excision, but introduction of multiple arm-type site mutations in attR did not have an effect on the excision frequency. A sixth arm-type site, the R1 site, was also identified and shown to be required for integration and important for efficient excision. These results suggest that intramolecular IntDOT interactions are required for integration, while the actions of accessory factors are more important for excision. Gel shift assays performed in the presence of core-and arm-type site DNAs showed that IntDOT affinity for the attDOT core was enhanced when IntDOT was simultaneously bound to arm-type site DNA.Conjugative transposons (CTns), also known as integrative and conjugative elements (ICEs), are mobile genetic elements that are widespread in Bacteroides spp. and are implicated in the spread of antibiotic resistance. These elements are normally integrated into the host chromosome but can excise, replicate, and transfer to a recipient cell by conjugation (34). Since CTns commonly carry antibiotic resistance genes, it is likely that the increase in antibiotic-resistant Bacteroides strains has been mediated through the lateral transfer of these elements (36). One of the best-studied ICEs in Bacteroides is the conjugative transposon CTnDOT. CTnDOT is 65 kb in size and carries genes encoding resistance to tetracycline and erythromycin. Over the past 30 years, the incidence of tetracycline resistance has increased to 80% of Bacteroides isolates due to the presence of CTnDOT-type elements (36).Integration and excision of CTnDOT results from site-specific recombination between regions of DNA known as attachment (att) sites. During integration, the joined ends of the closed circular intermediate (attDOT) recombine with the bacterial target sequence (attB) to form the recombinant sites (attL and attR). The integration reaction requires IntDOT, a CTnDOT-encoded protein that has been identified as a member of the tyrosine recombinase family, as well as a host factor encoded by Bacteroides (8, 21). Site-specific recombination between the attL and attR attachment sites results in excision of CTnDOT from the host chromosome. IntDOT is also required for excision, as are three element-encoded proteins: Orf...