Effective conservation requires rigorous baselines of pristine conditions to assess the impacts of human activities and to evaluate the efficacy of management. Most coral reefs are moderately to severely degraded by local human activities such as fishing and pollution as well as global change, hence it is difficult to separate local from global effects. To this end, we surveyed coral reefs on uninhabited atolls in the northern Line Islands to provide a baseline of reef community structure, and on increasingly populated atolls to document changes associated with human activities. We found that top predators and reef-building organisms dominated unpopulated Kingman and Palmyra, while small planktivorous fishes and fleshy algae dominated the populated atolls of Tabuaeran and Kiritimati. Sharks and other top predators overwhelmed the fish assemblages on Kingman and Palmyra so that the biomass pyramid was inverted (top-heavy). In contrast, the biomass pyramid at Tabuaeran and Kiritimati exhibited the typical bottom-heavy pattern. Reefs without people exhibited less coral disease and greater coral recruitment relative to more inhabited reefs. Thus, protection from overfishing and pollution appears to increase the resilience of reef ecosystems to the effects of global warming.

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Three macroalgal species belonging to Chlorophyta (Ulva rigida), Rhodophyta (Ellisolandia elongata) and Phaeophyceae (Heterokontophyta; Cystoseira tamariscifolia), naturally growing at the same shore level and representing 3 morpho-functional groups, were exposed to short-term changes in temperature under different carbon and nitrogen regimes. Experiments were conducted in outdoor tanks at 4 combinations of carbon and nitrogen levels under reduced solar radiation. In vivo chl a fluorescence parameters and pigment contents were monitored to assess diurnal physiological responses and potential for recovery. Strong fluctuations in chl a fluorescence parameters, but not in chl a content, were observed in response to diurnal variation in solar radiation and light climate within the tanks; sensitivity varied between algal species and, in some cases, depended on the carbon and nitrogen regime. Nitrogen uptake was similarly high in U. rigida and E. elongata and lowest in C. tamariscifolia. In U. rigida and E. elongata, chl a concentrations decreased after high-carbon treatments. Effective photosystem II quantum efficiency was reduced in all species at noon, and lowest in C. tamariscifolia. The results highlight the complexity of physiological short-term acclimations which were most likely linked to biochemical changes at the cellular level. Long-term experiments are required in future for more comprehensive investigation of the observed interactive effects of the different environmental parameters

To increase knowledge of transcript diversity for the giant kelp, Macrocystis pyrifera, and assess gene expression across naturally occurring depth gradients in light, temperature and nutrients, we sequenced four cDNA libraries created from blades collected at the sea surface and at 18 m depth during the winter and summer.Comparative genomics cluster analyses revealed novel gene families (clusters) in existing brown alga expressed sequence tag data compared with other related algal groups, a pattern also seen with the addition of M. pyrifera sequences.Assembly of 228 Mbp of sequence generated c. 9000 isotigs and c. 12 000 open reading frames. Annotations were assigned using families of hidden Markov models for c. 11% of open reading frames; M. pyrifera had highest similarity to other members of the Phaeophyceae, namely Ectocarpus siliculosus and Laminaria digitata.Quantitative polymerase chain reaction of transcript targets verified depth-related differences in gene expression; stress response and light-harvesting transcripts, especially members of the LI818 (also known as LHCSR) family, showed high expression in the surface compared with 18 m depth, while some nitrogen acquisition transcripts (e.g. nitrite reductase) were upregulated at depth compared with the surface, supporting a conceptual biological model of depth-dependent physiology.

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