In this study, we analyzed DNA sequence of mitochondrial DNA (mtDNA) control regions on the 130 native domestic pigs and eight wild boars in the mainland South and South-east Asian countries including Bhutan, Cambodia, Laos, Myanmar, and Vietnam. Forty-four haplotypes were found in the 138 individuals, 41 were in the domestic and four were in wild boars. Only one haplotype was shared by domestic and wild population in Bhutan. In other cases, mtDNA of wild boars did not show close affinity to that of the domestic pigs in the same location, indicating that the native domestic pigs in these countries did not originate in the present habitat. Phylogenetic analyzes of mtDNA haplotypes recapitulated several major clusters identified in other studies, but 11 haplotypes were grouped in a new cluster we named MTSEA. In most cases, more than one lineage group were present in a sampling station, indicating that the present indigenous domestic pigs may have multiple origins. The MTSEA haplotypes were present in relatively high frequencies in domestic pigs in the mountainous area of mainland South-east Asia (Cambodia and Laos), with a few found in Myanmar and Bhutan. The distributions of MTSEA haplotypes are in great conformity with the distribution of present-day Mon-Khmer language and indicated the existence of yet another independent domestication. The D2 haplotypes that distribute high frequency (almost 100%) throughout the Chinese breeds were dominant in Bhutan, Myanmar, and Vietnam. These results suggest an existence of human-mediated dispersal of domestic pigs from north to the south during the historical expansion of Sino-Tibetan and Tai peoples. The D3 haplotypes previously reported in north India were found in sympatric domestic and wild pigs in Bhutan. The D3 haplotype is an important proof of independent domestication event and/or great gene flow between wild and domestic pigs in the foot of Himalaya.

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Yak (Bos grunniens L.) herding plays an important role in the domestic economy throughout much of the Asian highlands. Yak represents a major mammal species of the rangelands found across the Asian highlands from Russia and Kyrgyzstan in the west to the Hengduan Mountains of China in the east. Yak also has great cultural significance to the people of the Asian highlands and is closely interlinked to the traditions, cultures, and rituals of the herding communities. However, increasing issues like poverty, environmental degradation, and climate change have changed the traditional practices of pastoralism, isolating and fragmenting herders and the pastures they have been using for many years. Local cultures of people rooted in the practice of yak herding are disappearing. Therefore, it is very important to document the socioeconomic and cultural aspects of yak herding. The broad aim of this paper was to provide a brief overview on the geographical distribution of yak in the Asian highlands and to provide in-depth information on yak-herding ethnic communities, the sociocultural aspect associated with yak herding, and challenges and emerging opportunities for yak herding in the Asian highlands. Altogether, 31 ethnic groups in 10 different countries of Asia and their cultures are documented herein. Yak was found to be utilized for many different household purposes, and to have cultural and religious aspects. Unfortunately, yak rearing and related traditions have been losing their charm in recent years due to modernization and several other environmental issues. Lastly, we suggest that there is an urgent need to take action to minimize the challenges faced by yak-herding mountain communities to conserve the traditional pastoral system and associated cultures of these ethnic communities.

The musk shrew (Suncus murinus) is a small mammalian species belonging to Insectivora. It is widely distributed in Asia. To identify the genetic relationship among wild musk shrew populations and examine its migration route, we investigated the populations of Cambodia and Bhutan by using mitochondrial DNA restriction fragment length polymorphism analysis and compared them with other Asian populations previously described. Four haplotypes were detected in Cambodia and eight in Bhutan. A total of 53 haplotypes were detected in Asia and were classified largely into two groups, the Continental and Island types, based on a minimum spanning network. From the distribution of mtDNA types in wild musk shrews, three major population groups are identified in Asia: South Asia, Southeast Asia, and Malay. It is suggested that the Malay population group was a mix of South and Southeast Asian population groups and that this was a contact area of the two groups. In addition, other contact areas between the South and Southeast Asian groups exist in Myanmar, but unlike the Malay, the Myanmar area was the border of these groups.

Subsistence Bhutanese farmers spread across different agro-ecological zones maintain large species and varietal diversity of different crops in their farm. However, no studies have been undertaken yet to assess why farmers conserve and maintain large agro-biodiversity, the extent of agro-ecological richness, species richness, estimated loss of traditional varieties and threats to the loss of on-farm agro-biodiversity. Information on the number of varieties cultivated by the farmers for six important staple crops were collected from nine districts and twenty sub-districts spread across six different agro-ecological zones of the country to understand farmers reasons for maintaining on-farm crop diversity, estimate OPEN ACCESSAgriculture 2015, 5 3 agro-ecological richness, species richness and the overall loss of traditional varieties, to know the famers' level of awareness on climate change and the different threats to crop diversity. The results from this study indicated that an overwhelming 93% of the respondents manage and use agro-biodiversity for household food security and livelihood. The average agro-ecological richness ranged from 1.17 to 2.26 while the average species richness ranged from 0.50 to 2.66. The average agro-ecological richness indicates a large agro-ecological heterogeneity in terms of the different species of staple crops cultivated. The average species richness on the other hand shows that agro-ecological heterogeneity determines the type and extent of the cultivation of the six different staple cereals under consideration. The overall loss of traditional varieties in a time period of 20 years stands at 28.57%. On climate change, 94% of the farmers recognize that local climate is changing while 86% responded that they are aware of the potential impacts of climate change on their livelihoods. Climate change and associated factors was considered the most imminent threat to the management and loss of on-farm agro-biodiversity. The results from this study indicate that on-farm agro-biodiversity conservation, development and utilization programs have to be more specific to the different agro-ecological zones considering the agro-ecological heterogeneity. Attention has to be given to individual crops that have low average species richness and high percentage of loss of traditional varieties. The impact of climate change could offset the traditional seed system which primarily supports the persistence of on-farm agro-biodiversity in several ways.