The bacteriophage infection cycle plays a crucial role in recycling the world's biomass. Bacteriophages devise various cell lysis systems to strictly control the length of the infection cycle for an efficient phage life cycle. Phages evolved with lysis protein systems, which can control and fine-tune the length of this infection cycle depending on the host and growing environment. Among these lysis proteins, holin controls the first and ratelimiting step of host cell lysis by permeabilizing the inner membrane at an allele-specific time and concentration hence known as the simplest molecular clock. Pinholin S 21 is the holin from phage Φ21, which defines the cell lysis time through a predefined ratio of active pinholin and antipinholin (inactive form of pinholin). Active pinholin and antipinholin fine-tune the lysis timing through structural dynamics and conformational changes. Previously we reported the structural dynamics and topology of active pinholin S 21 68. Currently, there is no detailed structural study of the antipinholin using biophysical techniques. In this study, the structural dynamics and topology of antipinholin S 21 68 IRS in DMPC proteoliposomes is investigated using electron paramagnetic resonance (EPR) spectroscopic techniques. Continuous-wave (CW) EPR line shape analysis experiments of 35 different R1 side chains of S 21 68 IRS indicated restricted mobility of the transmembrane domains (TMDs), which were predicted to be inside the lipid bilayer when compared to the N-and C-termini R1 side chains. In addition, the R1 accessibility test performed on 24 residues using the CW-EPR power saturation experiment indicated that TMD1 and TMD2 of S 21 68 IRS were incorporated into the lipid bilayer where N-and C-termini were located outside of the lipid bilayer. Based on this study, a tentative model of S 21 68 IRS is proposed where both TMDs remain incorporated into the lipid bilayer and N-and C-termini are located outside of the lipid bilayer. This work will pave the way for the further studies of other holins using biophysical techniques and will give structural insights into these biological clocks in molecular detail.
The Co-N-C catalyst with higher nitrogen content was fabricated with a ploymerizable ionic liquid (PIL) of hydrolyzed vinyl imidazolium dihydrogen phosphate ([HVim]H 2 PO 4 ) as Ndoping precursor. The PIL was firstly prepared and then reacted with Co(NO 3 ) 2 6H 2 O. The Ndoped Co-based catalyst was then obtained after carbonization process at 600 o C. The electrochemical characterization indicated that the electro-activity of catalyst prepared with PIL shows higher activity towards oxygen reduction reaction (ORR) than that of the sample prepared with non-IL precursor or non-polymerizable IL under similar conditions. The ORR onset potential of the C 1 (PIL as precursor) was approximately 100 mV higher than the counterpart prepared with C 2 (non-IL precursor) or C 3 (non-polymerizable IL precursor) in basic electrolyte.The XPS results demonstrated that C 1 contains higher nitrogen with more pyridinic and pyrrolic nitrogen group, which was favorable for ORR.
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