Genetic and phenotypic correlations between milk coagulation properties (MCP: coagulation time and curd firmness), milk yield, fat content, protein content, ln(somatic cell count) (SCS), casein content, and pH of milk and heritability of these traits were estimated from data consisting of milk samples of 4664 Finnish Ayrshire cows sired by 91 bulls. In addition, differences in average estimated breeding values (EBV) for the above traits between the cows with noncoagulating (NC) milk and those with milk that coagulated (CO samples) were examined. The estimations were carried out to study the possibilities of indirect genetic improvement of MCP by use of the above characteristics. The genetic and phenotypic correlations between MCP and the milk production traits were low or negligible. The genetic associations between desirable MCP and low SCS were rather strong (-0.45 to 0.29). Desirable MCP correlated both genetically and phenotypically with low pH of milk (-0.51 to 0.50). The rather high heritability estimates for curd firmness in different forms (0.22 to 0.39), and the wide variation in the proportion of daughters producing NC milk between the sires (0 to 47%) suggested that noncoagulation of milk is partly caused by additive genetic factors. Based on the genetic correlations between curd firmness and SCS and the high EBV for SCS obtained for the cows with NC-milk, it is possible that the loci causing noncoagulation of milk and increasing somatic cell count of milk are closely linked or partly the same. One means to genetically improve MCP and to reduce the occurrence of NC milk could thus be selection for low somatic cell count of milk.

The genetic parameters were estimated for milk coagulation properties and milk production traits, and the prevalence of noncoagulating milk in the Finnish dairy cattle population was investigated. Data were included for 789 Finnish Ayrshire cows and 86 Finnish Friesian cows from 51 herds. The animal model used for estimation included fixed effects for parity, stage of lactation, breed, and herd. Further, effects of milk protein genotypes on phenotypic and genetic variation in the studied traits were examined. Heritability estimates for the milk coagulation properties were moderately high. The kappa-casein B allele was associated with the best phenotypic and genetic values for curd firmness, and the A and E alleles were associated with the poorest. About 24% of the additive genetic variation in the curd firmness was due to milk protein polymorphism. About 8% of the Finnish Ayrshire cows in the present study produced noncoagulating milk. Because of the occurrence of the noncoagulating milk and a possibly unfavorable genetic trend in the milk coagulation properties, it would be important to improve these traits in the Finnish Ayrshire breed. Milk coagulation properties could be improved directly by selecting for these traits or indirectly by favoring the kappa-casein B allele or by selecting against genetic markers associated with poorly coagulating or noncoagulating milk.

Genotypic effects of beta-casein (CN), kappa-CN, and beta-lactoglobulin (LG) on milk, fat, and protein production and fat and protein percentages were estimated for 18,686 Finnish Ayrshire cows in first lactation using an animal model. Casein genotype effects were estimated including individual beta-CN and kappa-CN simultaneously in a model and then as composite beta-kappa-CN. The A2 allele of beta-CN and the A allele of kappa-CN, as well as the A1 allele of beta-CN and the B or E allele of kappa-CN, appeared together more frequently than was expected. Because of linkage disequilibrium in the casein loci and, consequently, unbalanced data, some contradictory effects of casein genotypes were obtained with the two models. A well-founded way to estimate the effects of casein genotypes was to use beta-kappa-CN genotypes. Composite casein genotypes including the A2 allele of beta-CN were associated with the highest milk and protein production and the lowest fat content, those including the B allele of kappa-CN with the highest protein content, and those including the E allele of kappa-CN with the lowest protein content. The effect of the beta-kappa-CN genotypes on protein content was moderately strong, and the effect was somewhat smaller for other traits. The AA genotype of beta-LG had a favorable effect on milk and protein production, and the BB genotype had a favorable effect on fat content.

The effects of κ-β-casein genotypes and β-lactoglobulin genotypes on the renneting properties and composition of milk were estimated for 174 and 155 milk samples of 59 Finnish Ayrshire and 55 Finnish Friesian cows, respectively. As well as the random additive genetic and permanent environmental effects of a cow, the model included the fixed effects for parity, lactation stage, season, κ-β-casein genotypes and κ-lactoglobulin genotypes. Favourable renneting properties were associated with κ-β-casein genotypes ABA1A2, ABA1A1 and AAA1A2 in the Finnish Ayrshire, and with ABA2B, AAA1A3, AAA2A3, ABA1A2 and ABA2A2 in the Finnish Friesian. The favourable effect of these genotypes on curd firming time and on firmness of the curd was partly due to their association with a high κ-casein concentration in the milk. The effect of the κ-casein E allele on renneting properties was unfavourable compared with that of the κ-casein B allele, and possibly with that of the A allele. The β-lactoglobulin genotypes had no effect on renneting properties but they had a clear effect on the protein composition of milk. The β-lactoglobulin AA genotype was associated with a high whey protein % and β-lactoglobulin concentration and the BB genotype with a high casein % and casein number.

The objective of this study was to estimate the effects of beta-kappa-casein (CN) haplotypes on first-lactation milk production traits. The beta-kappa-CN haplotypes were deduced using information on beta- and kappa-CN genotypes of cows and their sires for 16,973 Finnish Ayrshire cows that had at least nine paternal half sibs. Effects of CN haplotypes on milk production traits were estimated for one haplotype at a time using an animal model, which included the fixed effects for calving year and month, age at calving, days open, beta-lactoglobulin, and a beta-kappa-CN haplotype. Differences in milk production traits were also estimated between haplotype combinations A1A+A2B and A1B+A2A within beta-kappa-CN genotype A1A2AB and between combinations A1E+A2A and A1A+A2E within genotype A1A2AE. The beta-kappa-CN haplotypes A2A and A2B were associated with high milk and protein yields and low fat content, and those that included the beta-CN A1 allele were associated with low yields and high fat content. Protein content was affected by the kappa-CN locus; haplotype A1B was associated with high protein content and A1E was with low protein content. The haplotype combination A1A+A2B was associated with 140 kg more milk yield (P = 0.045) and 0.03 percentage units less protein content (P = 0.055) than combination A1B+A2A, and combination A1A+A2E showed 0.02 percentage units greater protein content (P = 0.098) than A1E+A2A. These results indicate that genes linked to the CN loci contribute to the variation in milk yield and protein content.