MoSDeF-GOMC is a python interface for the Monte Carlo
software
GOMC to the Molecular Simulation Design Framework (MoSDeF) ecosystem.
MoSDeF-GOMC automates the process of generating initial coordinates,
assigning force field parameters, and writing coordinate (PDB), connectivity
(PSF), force field parameter, and simulation control files. The software
lowers entry barriers for novice users while allowing advanced users
to create complex workflows that encapsulate simulation setup, execution,
and data analysis in a single script. All relevant simulation parameters
are encoded within the workflow, ensuring reproducible simulations.
MoSDeF-GOMC’s capabilities are illustrated through a number
of examples, including prediction of the adsorption isotherm for CO2 in IRMOF-1, free energies of hydration for neon and radon
over a broad temperature range, and the vapor–liquid coexistence
curve of a four-component surrogate for the jet fuel S-8. The MoSDeF-GOMC
software is available on GitHub at .
The paper introduces DeepForge, a gateway to deep learning for scientific computing. DeepForge provides an easy to use, yet powerful visual/textual interface to facilitate the rapid development of deep learning models by novices as well as experts. Utilizing a cloud-based infrastructure, built-in version control, and multiuser collaboration support, DeepForge promotes reproducibility and ease of access and enables remote execution of machine learning pipelines. The tool currently supports TensorFlow/Keras, but its extensible architecture enables easy integration of additional platforms.
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