Despite recent advances in natural language processing, many statistical models for processing text perform extremely poorly under domain shift. Processing biomedical and clinical text is a critically important application area of natural language processing, for which there are few robust, practical, publicly available models. This paper describes scis-paCy, a new Python library and models for practical biomedical/scientific text processing, which heavily leverages the spaCy library. We detail the performance of two packages of models released in scispaCy and demonstrate their robustness on several tasks and datasets. Models and code are available at https:// allenai.github.io/scispacy/.

Pre-trained word embeddings learned from unlabeled text have become a standard component of neural network architectures for NLP tasks. However, in most cases, the recurrent network that operates on word-level representations to produce context sensitive representations is trained on relatively little labeled data. In this paper, we demonstrate a general semi-supervised approach for adding pretrained context embeddings from bidirectional language models to NLP systems and apply it to sequence labeling tasks. We evaluate our model on two standard datasets for named entity recognition (NER) and chunking, and in both cases achieve state of the art results, surpassing previous systems that use other forms of transfer or joint learning with additional labeled data and task specific gazetteers.

We train one multilingual model for dependency parsing and use it to parse sentences in several languages. The parsing model uses (i) multilingual word clusters and embeddings; (ii) token-level language information; and (iii) language-specific features (finegrained POS tags). This input representation enables the parser not only to parse effectively in multiple languages, but also to generalize across languages based on linguistic universals and typological similarities, making it more effective to learn from limited annotations. Our parser's performance compares favorably to strong baselines in a range of data scenarios, including when the target language has a large treebank, a small treebank, or no treebank for training.

We describe a deployed scalable system for organizing published scientific literature into a heterogeneous graph to facilitate algorithmic manipulation and discovery. The resulting literature graph consists of more than 280M nodes, representing papers, authors, entities and various interactions between them (e.g., authorships, citations, entity mentions). We reduce literature graph construction into familiar NLP tasks (e.g., entity extraction and linking), point out research challenges due to differences from standard formulations of these tasks, and report empirical results for each task. The methods described in this paper are used to enable semantic features in www.semanticscholar.org.

Peer reviewing is a central component in the scientific publishing process. We present the first public dataset of scientific peer reviews available for research purposes (PeerRead v1), 1 providing an opportunity to study this important artifact. The dataset consists of 14.7K paper drafts and the corresponding accept/reject decisions in top-tier venues including ACL, NIPS and ICLR. The dataset also includes 10.7K textual peer reviews written by experts for a subset of the papers. We describe the data collection process and report interesting observed phenomena in the peer reviews. We also propose two novel NLP tasks based on this dataset and provide simple baseline models. In the first task, we show that simple models can predict whether a paper is accepted with up to 21% error reduction compared to the majority baseline. In the second task, we predict the numerical scores of review aspects and show that simple models can outperform the mean baseline for aspects with high variance such as 'originality' and 'impact'. 2 The 20 th SIGNLL Conference on Computational Natural Language Learning; http://www.conll.org/2016 3 The 55 th Annual Meeting of the Association for Computational Linguistics; http://acl2017.org/ 4 The Conference on Neural Information Processing Systems; https://nips.cc/ 5 http://openreview.net 6 The 5 th International Conference on Learning Representations; https://iclr.cc/archive/www/2017.html 7The platform also allows any person to review the paper by adding a comment, but we only use the official reviews of reviewers assigned to review that paper. 8 https://arxiv.org/ 9 For consistency, we only include the first arXiv version of each paper (accepted or rejected) in the dataset.