A preliminary version appeared as INRIA Research Report 5255, July 2004.Tensors are nowadays a common source of geometric information. In this paper, we propose to endow the tensor space with an affine-invariant Riemannian metric. We demonstrate that it leads to strong theoretical properties: the cone of positive definite symmetric matrices is replaced by a regular and complete manifold without boundaries (null eigenvalues are at the infinity), the geodesic between two tensors and the mean of a set of tensors are uniquely defined, etc. We have previously shown that the Riemannian metric provides a powerful framework for generalizing statistics to manifolds. In this paper, we show that it is also possible to generalize to tensor fields many important geometric data processing algorithms such as interpolation, filtering, diffusion and restoration of missing data. For instance, most interpolation and Gaussian filtering schemes can be tackled efficiently through a weighted mean computation. Linear and anisotropic diffusion schemes can be adapted to our Riemannian framework, through partial differential evolution equations, provided that the metric of the tensor space is taken into account. For that purpose, we provide intrinsic numerical schemes to compute the gradient and Laplace-Beltrami operators. Finally, to enforce the fidelity to the data (either sparsely distributed tensors or complete tensors fields) we propose least-squares criteria based on our invariant Riemannian distance which are particularly simple and efficient to solve

We propose an efficient non-parametric diffeomorphic image registration algorithm based on Thirion's demons algorithm. In the first part of this paper, we show that Thirion's demons algorithm can be seen as an optimization procedure on the entire space of displacement fields. We provide strong theoretical roots to the different variants of Thirion's demons algorithm. This analysis predicts a theoretical advantage for the symmetric forces variant of the demons algorithm. We show on controlled experiments that this advantage is confirmed in practice and yields a faster convergence. In the second part of this paper, we adapt the optimization procedure underlying the demons algorithm to a space of diffeomorphic transformations. In contrast to many diffeomorphic registration algorithms, our solution is computationally efficient since in practice it only replaces an addition of displacement fields by a few compositions. Our experiments show that in addition to being diffeomorphic, our algorithm provides results that are similar to the ones from the demons algorithm but with transformations that are much smoother and closer to the gold standard, available in controlled experiments, in terms of Jacobians.

Diffusion tensor imaging (DT-MRI or DTI) is an emerging imaging modality whose importance has been growing considerably. However, the processing of this type of data (i.e., symmetric positive-definite matrices), called "tensors" here, has proved difficult in recent years. Usual Euclidean operations on matrices suffer from many defects on tensors, which have led to the use of many ad hoc methods. Recently, affine-invariant Riemannian metrics have been proposed as a rigorous and general framework in which these defects are corrected. These metrics have excellent theoretical properties and provide powerful processing tools, but also lead in practice to complex and slow algorithms. Key words: DT-MRI; Riemannian metrics; vector space; interpolation; regularizationDiffusion tensor imaging (DT-MRI or DTI or equivalently DT imaging) (1) is an emerging imaging modality whose importance has been growing considerably. In particular, most attempts to reconstruct noninvasively the connectivity of the brain are based on DTI (see (2-7) and references within for classical fiber tracking algorithms). Other applications of DT-MRI also include the study of diseases such as stroke, multiple sclerosis, dyslexia, and schizophrenia (8).The diffusion tensor is a simple and powerful model used to analyze the content of diffusion-weighted images (DWMRIs). It is based on the assumption that the motion of water molecules can be well approximated by a Brownian motion in each voxel of the image. This Brownian motion is entirely characterized by a symmetric and positive-definite matrix, called the "diffusion tensor" (1). In this article, we restrict the term tensor to mean a symmetric and positivedefinite matrix.With the increasing use of DT-MRI, there has been a growing need to generalize to the tensor case many usual vector processing tools. In particular, regularization techniques

Delineation of the left ventricular cavity, myocardium, and right ventricle from cardiac magnetic resonance images (multi-slice 2-D cine MRI) is a common clinical task to establish diagnosis. The automation of the corresponding tasks has thus been the subject of intense research over the past decades. In this paper, we introduce the "Automatic Cardiac Diagnosis Challenge" dataset (ACDC), the largest publicly available and fully annotated dataset for the purpose of cardiac MRI (CMR) assessment. The dataset contains data from 150 multi-equipments CMRI recordings with reference measurements and classification from two medical experts. The overarching objective of this paper is to measure how far state-of-the-art deep learning methods can go at assessing CMRI, i.e., segmenting the myocardium and the two ventricles as well as classifying pathologies. In the wake of the 2017 MICCAI-ACDC challenge, we report results from deep learning methods provided by nine research groups for the segmentation task and four groups for the classification task. Results show that the best methods faithfully reproduce the expert analysis, leading to a mean value of 0.97 correlation score for the automatic extraction of clinical indices and an accuracy of 0.96 for automatic diagnosis. These results clearly open the door to highly accurate and fully automatic analysis of cardiac CMRI. We also identify scenarios for which deep learning methods are still failing. Both the dataset and detailed results are publicly available online, while the platform will remain open for new submissions.

In medical image analysis and high level computer vision, there is an intensive use of geometric features like orientations, lines, and geometric transformations ranging from simple ones (orientations, lines, rigid body or affine transformations, etc.) to very complex ones like curves, surfaces, or general diffeomorphic transformations. The measurement of such geometric primitives is generally noisy in real applications and we need to use statistics either to reduce the uncertainty (estimation), to compare observations, or to test hypotheses. Unfortunately, even simple geometric primitives often belong to manifolds that are not vector spaces. In previous works [1, 2], we investigated invariance requirements to build some statistical tools on transformation groups and homogeneous manifolds that avoids paradoxes. In this paper, we consider finite dimensional manifolds with a Riemannian metric as the basic structure. Based on this metric, we develop the notions of mean value and covariance matrix of a random element, normal law, Mahalanobis distance and χ 2 law. We provide a new proof of the characterization of Riemannian centers of mass and an original gradient descent algorithm to efficiently compute them. The notion of Normal law we propose is based on the maximization of the entropy knowing the mean and covariance of the distribution. The resulting family of pdfs spans the whole range from uniform (on compact manifolds) to the point mass distribution. Moreover, we were able to provide tractable approximations (with their limits) for small variances which show that we can effectively implement and work with these definitions.