proposed a set of recommendations for the definition of distinct cell death morphologies and for the appropriate use of cell death-related terminology, including 'apoptosis', 'necrosis' and 'mitotic catastrophe'. In view of the substantial progress in the biochemical and genetic exploration of cell death, time has come to switch from morphological to molecular definitions of cell death modalities. Here we propose a functional classification of cell death subroutines that applies to both in vitro and in vivo settings and includes extrinsic apoptosis, caspase-dependent or -independent intrinsic apoptosis, regulated necrosis, autophagic cell death and mitotic catastrophe. Moreover, we discuss the utility of expressions indicating additional cell death modalities. On the basis of the new, revised NCCD classification, cell death subroutines are defined by a series of precise, measurable biochemical features.
Developing
multifunctional and easily prepared nanoplatforms with
integrated different modalities is highly challenging for molecular
imaging. Here, we report the successful transfer of an important molecular
target, melanin, into a novel multimodality imaging nanoplatform.
Melanin is abundantly expressed in melanotic melanomas and thus has
been actively studied as a target for melanoma imaging. In our work,
the multifunctional biopolymer nanoplatform based on ultrasmall (<10
nm) water-soluble melanin nanoparticle (MNP) was developed and showed
unique photoacoustic property and natural binding ability with metal
ions (for example, 64Cu2+, Fe3+).
Therefore, MNP can serve not only as a photoacoustic contrast agent,
but also as a nanoplatform for positron emission tomography (PET)
and magnetic resonance imaging (MRI). Traditional passive nanoplatforms
require complicated and time-consuming processes for prebuilding reporting
moieties or chemical modifications using active groups to integrate
different contrast properties into one entity. In comparison, utilizing
functional biomarker melanin can greatly simplify the building process.
We further conjugated αvβ3 integrins,
cyclic c(RGDfC) peptide, to MNPs to allow for U87MG tumor accumulation
due to its targeting property combined with the enhanced permeability
and retention (EPR) effect. The multimodal properties of MNPs demonstrate
the high potential of endogenous materials with multifunctions as
nanoplatforms for molecular theranostics and clinical translation.
Esophageal squamous cell carcinoma (ESCC) is a poor-prognosis cancer type with limited understanding of its molecular etiology. Using 508 ESCC genomes, we identified five novel significantly mutated genes and uncovered mutational signature clusters associated with metastasis and patients’ outcomes. Several functional assays implicated that
NFE2L2
may act as a tumor suppressor in ESCC and that mutations in
NFE2L2
probably impaired its tumor-suppressive function, or even conferred oncogenic activities. Additionally, we found that the
NFE2L2
mutations were significantly associated with worse prognosis of ESCC. We also identified potential noncoding driver mutations including hotspot mutations in the promoter region of
SLC35E2
that were correlated with worse survival. Approximately 5.9% and 15.2% of patients had high tumor mutation burden or actionable mutations, respectively, and may benefit from immunotherapy or targeted therapies. We found clinically relevant coding and noncoding genomic alterations and revealed three major subtypes that robustly predicted patients’ outcomes. Collectively, we report the largest dataset of genomic profiling of ESCC useful for developing ESCC-specific biomarkers for diagnosis and treatment.
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