In contrast to photolithography where particular wavelengths of light can couple to specific photochemistries, electron-beam lithography can drive competing chemistries. To separate surface-grafting, cross-linking, and chemical functionality, we studied the effects of 2 keV electrons on thin films of poly(ethylene glycol) end-functionalized with hydroxyls (PEG-OH) or biotins (PEG-B). Similarities in the dose-dependent thickness changes of the patterned PEGs indicate that surface grafting and cross-linking primarily involve the ethylene oxide main chain. While higher doses create thicker patterns with more biotin, the concurrent increase in thiol reactivity indicates that crosslinking competes with biotin degradation. The dose window for optimal e-beam patterning of biotinylated PEG is very narrow. Biotin is entirely consumed at higher doses. Its modified functionality is reactive with 5-((2-(and-3)-S-(acetylmercapto) succinoyl) amino) (SAMSA). This effect creates a dose-dependent orthogonal functionality that can be patterned from a single precursor thin film.

We use electron-beam patterned functional microgels to integrate self-reporting molecular beacons, dielectric microlenses, and solid-phase and/or solution-phase nucleic acid amplification in a viral-detection microarray model.

Because of its widely known antifouling properties, a variety of lithographic approaches has been used to pattern surfaces with poly­(ethylene glycol) (PEG) to control surface interactions with biomolecules and cells over micro- and nanolength scales. Often, however, particular applications need additional functions within PEG-patterned surfaces. Monofunctional films can be generated using PEG modified to include a chemically functional group. We show that patterning with focused electron beams, in addition to cross-linking a monofunctional PEG homopolymer thin-film precursor and grafting the resulting patterned microgels to an underlying substrate, induces additional chemical functionality by radiation chemistry along the polymer main chain and that this second functionality can be orthogonal to the initial one. Specifically, we explore the reactivity of biotin-terminated PEG (PEG-B) as a function of electron dose using 2 keV electrons. At low doses (∼4–10 μC/cm2), the patterned PEG-B microgels are reactive with streptavidin (SA). As dose increases, the SA reactivity decays as biotin is damaged by the incident electrons. Independently, amine reactivity appears at higher doses (∼150–500 μC/cm2). At both extremes, the patterned PEG microgels retain their ability to resist fibronectin adsorption. We confirm that the amine reactivity derives from the PEG main chain by demonstrating similar dose response in hydroxy-terminated PEG (PEG-OH), and we attribute this behavior to the formation of ketones, aldehydes, and/or carboxylic acids during and after electron-beam (e-beam) patterning. Based on relative fluorescent intensities, we estimate that the functional contrast between the differentially patterned areas is about a factor of six or more. This approach provides the ability to easily pattern biospecific functionality while preserving the ability to resist nonspecific adsorption at length scales relevant to controlling protein and cell interactions.

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