The reactions of peroxyl radicals occupy a central role in oxidative degradation. Under the term Advanced Oxidation Processes in drinking-water and wastewater processing, procedures are summarized that are based on the formation and high reactivity of the OH radical. These react with organic matter (DOC). With O2, the resulting carbon-centered radicals O2 give rise to the corresponding peroxyl radicals. This reaction is irreversible in most cases. An exception is hydroxycyclohexadienyl radicals which are formed from aromatic compounds, where reversibility is observed even at room temperature. Peroxyl radicals with strongly electron-donating substituents eliminate O2.−, those with an OH-group in a-position HO2.. Otherwise organic peroxyl radicals decay bimolecularly. The tetroxides formed in the first step are very short-lived intermediates and decay by various pathways, leading to molecular products (alcohols, ketones, esters and acids, depending on the precursor), or to oxyl radicals, which either fragment by scission of a neighbouring C-C bond or, when they carry an a-hydrogen, undergo a (water-assisted) 1,2-H-shift.

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We apply synchrotron-based small-angle X-ray scattering to investigate the relationship between compaction, metal binding, and structure formation of two RNAs at 37 degrees C: the 76 nucleotide yeast tRNA(Phe) and the 255 nucleotide catalytic domain of the Bacillus subtilis RNase P RNA. For both RNAs, this method provides direct evidence for the population of a distinct folding intermediate. The relative compaction between the intermediate and the native state does not correlate with the size of the RNA but does correlate well with the amount of surface burial as quantified previously by the urea-dependent m-value. The total compaction process can be described in two major stages. Starting from a completely unfolded state (4-8 M urea, no Mg(2+)), the major amount of compaction occurs upon the dilution of the denaturant and the addition of micromolar amounts of Mg(2+) to form the intermediate. The native state forms in a single transition from the intermediate state upon cooperative binding of three to four Mg(2+) ions. The characterization of this intermediate by small-angle X-ray scattering lends strong support for the cooperative Mg(2+)-binding model to describe the stability of a tertiary RNA.