3Outer membrane proteins (OMPs) play important roles in Gram-negative bacteria, mitochondria and chloroplasts in nutrition transport, protein import, secretion, and other fundamental biological processes [1][2][3] . Dysfunction of mitochondria outer membrane proteins are linked to disorders such as diabetes, Parkinsons and other neurodegenerative diseases 4,5 . The OMPs are inserted and folded correctly into the outer membrane (OM) by the conserved OMP85 family proteins [6][7][8] , suggesting that similar insertion mechanisms may be used in Gram-negative bacteria, mitochondria and chloroplasts.In Gram-negative bacteria, OMPs are synthesized in the cytoplasm, and are transported across the inner membrane by SecYEG into the periplasm 8,9 . The seventeen kilodalton (kDa) protein (Skp) and the survival factor A (SurA) chaperones escort the unfolded OMPs across the periplasm to the β-barrel assembly machinery (BAM), which is responsible for insertion and assembly of OMPs into the OM 10-12 . InEscherichia coli, the BAM complex consists of BamA and four lipoprotein subunits, BamB, BamC, BamD and BamE. BamA is comprised of five N-terminal polypeptide transport-associated (POTRA) domains and a C-terminal OMP transmembrane barrel, while the four lipoproteins are affixed to the membrane by N-terminal lipid-modified cysteines. Of these subunits, BamA and BamD are essential 3,6 . One copy of each of these five proteins is required to form the BAM complex with an approximate molecular weight of 200 kDa (Extended Data Fig. 1). In vitro reconstitution of the E.coli BAM complex and functional assays showed that all five subunits are required to obtain the maximum activity of BAM [13][14][15][16] . Furthermore, comparison of the two complexes reveals that the periplasmic units are rotated with respect to the barrel, which appears to be linked to significant conformational changes in the β-strands β1C-β6C of the barrel. Taken together this suggests a novel insertion mechanism whereby rotation of the BAM periplasmic ring promotes insertion of OMPs into the OM. To our knowledge, this is the first reported crystal structure of an intramembrane barrel with a lateral-open conformation.Unique architecture of two E. coli BAM complexes X-ray diffraction data of selenomethionine labelled crystals were collected to 3.9Ångström (Å) resolution and the BAM structure was determined by singlewavelength anomalous dispersion (SAD) and manual molecular replacement (Methods, Extended Data Table 1). The first structure contained four proteins: BamA, BamC, BamD and BamE (Fig. 1a-c), with the electron density and crystal packing indicating that the BamB is absent in the complex. This was confirmed by SDS-PAGE analysis of the crystals (Extended Data Fig. 1 and Supplementary Data Fig. S1). In this model, BamA, BamC, BamD and BamE contain residues E22-I806, C25-K344, E26-S243, and C20-E110, respectively. The machinery is approximately 115 Å in length, 84 Å in width and 132 Å in height (Fig. 1a). 5The architecture of BamACDE resembles a top hat with a...

BackgroundConventional prenatal screening tests, such as maternal serum tests and ultrasound scan, have limited resolution and accuracy.MethodsWe developed an advanced noninvasive prenatal diagnosis method based on massively parallel sequencing. The Noninvasive Fetal Trisomy (NIFTY) test, combines an optimized Student’s t-test with a locally weighted polynomial regression and binary hypotheses. We applied the NIFTY test to 903 pregnancies and compared the diagnostic results with those of full karyotyping.Results16 of 16 trisomy 21, 12 of 12 trisomy 18, two of two trisomy 13, three of four 45, X, one of one XYY and two of two XXY abnormalities were correctly identified. But one false positive case of trisomy 18 and one false negative case of 45, X were observed. The test performed with 100% sensitivity and 99.9% specificity for autosomal aneuploidies and 85.7% sensitivity and 99.9% specificity for sex chromosomal aneuploidies. Compared with three previously reported z-score approaches with/without GC-bias removal and with internal control, the NIFTY test was more accurate and robust for the detection of both autosomal and sex chromosomal aneuploidies in fetuses.ConclusionOur study demonstrates a powerful and reliable methodology for noninvasive prenatal diagnosis.

The purpose of this study was to determine absolute protein expression levels of transporters in rat choroid plexus, that is, the blood-cerebrospinal fluid barrier, and to compare them with the levels in the human choroid plexus. Plasma membrane fractions were prepared from pooled, freshly isolated choroid plexuses of 30 male Wistar rats and from frozen choroid plexus of one male human donor. Protein expression levels of 54 rat and 121 human molecules were measured, using a quantitative targeted absolute proteomics technique. In rat, oatp1a5 showed the most abundant protein expression (30.3 fmol/lg protein), and its expression level was 3.1-, 4.5-, 5.5-, 8.4-, 9.0-, 9.9-, 22-, 91-, and 95-fold greater than those of glut1, oatp1c1, mrp1, mct1, oat3, pept2, mrp4, bcrp, and mdr1a, respectively. OATP1A2 (a possible homolog of rat oatp1a5), OATP1C1 and PEPT2 were not detected in human choroid plexus. MRP1, OAT3, and MRP4 showed 4.0-, 1.8-, and 1.7-fold smaller expression levels in human than rat, respectively. MATE1 was detected in human, but not rat, and its expression level (8.61 fmol/lg protein) was the highest among the xenobiotic transporters examined in human choroid plexus. These findings should be useful for understanding rat blood-cerebrospinal fluid barrier function and its differences from that in human. Keywords: blood-cerebrospinal fluid barrier, human-rat difference, MATE1, oatp1a5, PEPT2, protein expression level. The transport capacities of membrane transporters at the BCSFB have been evaluated using specific substrates and/or inhibitors of target transporters by means of several techniques, such as intracerebroventricular administration and uptake experiments using isolated choroid plexus (Kuroda et al. 2005;Tachikawa et al. 2012). However, potential overlaps of substrate specificity among different transporters, including ones with unknown function, together with the lack of specific substrates and inhibitors, make these Received February 8, 2015; revised manuscript received April 9, 2015; accepted April 13, 2015. Address correspondence and reprint requests to Tetsuya Terasaki, Division of Membrane Transport and Drug Targeting, Graduate School of Pharmaceutical Sciences, Tohoku University, 6-3 Aoba, Aramaki, Aoba-ku, Sendai 980-8578, Japan. E-mail: terasaki.tetsuya@m.tohoku. ac.jpAbbreviations used: ABC, ATP-binding cassette; BBB, blood-brain barrier; BCSFB, blood-cerebrospinal fluid barrier; CNS, central nervous system; CSF, cerebrospinal fluid; LC-MS/MS, liquid chromatographytandem mass spectrometry; LQ, limit of quantification; QTAP, quantitative targeted absolute proteomics; SLC, solute carrier; SRM/MRM, selected/ multiple reaction monitoring; ULQ, under limit of quantification.

Beryllium is a simple alkali earth metal, but has been the target of intensive studies for decades because of its unusual electron behaviors at surfaces. Puzzling aspects include (i) severe deviations from the description of the nearly free electron picture, (ii) anomalously large electron-phonon coupling effect, and (iii) giant Friedal oscillations. The underlying origins for such anomalous surface electron behaviors have been under active debate, but with no consensus. Here, by means of first-principle calculations, we discover that this pure metal system, surprisingly, harbors the Dirac node line (DNL) that in turn helps to rationalize many of the existing puzzles. The DNL is featured by a closed line consisting of linear band crossings and its induced topological surface band agrees well with previous photoemission spectroscopy observation on Be (0001) surface. We further reveal that each of the elemental alakali earth metals of Mg, Ca, and Sr also harbors the DNL, and speculate that the fascinating topological property of DNL might naturally exist in other elemental metals as well.Topological semimetals [1] represent new types of quantum matter, currently attracting widespread interest in condensed matter physics and materials science. Compared with normal metals, topological semimetals are distinct in two essential aspects: the crossing points of the energy bands occur at the Fermi level, and some of the crossing points consist of the monopoles in the lattice momentum space. Topological semimetals can be classified into three main categories, topological Dirac (TD) [2], topological Weyl (TW) [3] and Dirac node line (DNL) semimetals [4][5][6], respectively. In the former two cases of TD and TW, the monopoles form isolated points in lattice momentum space and novel surface states (i.e., surface Dirac cones and Fermi-arc states) were observed or suggested, such as TD-type Na 3 Bi [7][8][9][10] In the third class of DNL, the crossings between energy bands form a fully closed line nearly at the Fermi level in the lattice momentum space, drastically different from the isolated Dirac (or Weyl) points in the TD and TW. The projection of the Dirac node line into a certain surface would result in a closed ring in which the topological surface states (usually flat bands) can be expected to appear due to the non-trivial topological property of its bulk phase. According to the previous DNL modelings [4,5], the band crossings occur at zero energy with a constraint chiral symmetry, leading to the appearance of flat topologically protected surface bands. However, in a real crystal the chiral symmetry of a band structure is not exact, thereby suggesting that the DNL does not generally occur at a constant energy and the DNL-induced topological surface bands are not flat either. Recently, this type of DNL states has been predicted in several cases of 3D carbon graphene allotropes [19] The metal of beryllium, which crystallizes in the hcp structure (see Fig. 1a), is a simple sp-bonded metal. Be is unusual in three aspects. F...

Lipopolysaccharides (LPS) of Gram-negative bacteria are critical for the defence against cytotoxic substances and must be transported from the inner membrane (IM) to the outer membrane (OM) through a bridge formed by seven membrane proteins (LptBFGCADE). The IM component LptB2FG powers the process through a yet unclarified mechanism. Here we report three high-resolution cryo-EM structures of LptB2FG alone and complexed with LptC (LptB2FGC), trapped in either the LPS- or AMP-PNP-bound state. The structures reveal conformational changes between these states and substrate binding with or without LptC. We identify two functional transmembrane arginine-containing loops interacting with the bound AMP-PNP and elucidate allosteric communications between the domains. AMP-PNP binding induces an inward rotation and shift of the transmembrane helices of LptFG and LptC to tighten the cavity, with the closure of two lateral gates, to eventually expel LPS into the bridge. Functional assays reveal the functionality of the LptF and LptG periplasmic domains. Our findings shed light on the LPS transport mechanism.