A century of diatom research on Lakes Ohrid and Prespa (Macedonia) has yielded 900 different taxonomic entities including species, varieties and unidentified species. This checklist is based on a comprehensive compilation of diatom names sourced from all available published data. The intention is to provide a basis for future diatom research on these diverse ancient lakes and their watersheds. The checklist is organized around the classification in Round et al. (1990), with a few minor modifications.

Lake Ohrid is a site of global importance for palaeoclimate research. This study presents results of diatom analysis of a ca. 136 ka sequence, Co1202, from the northeast of the lake basin. It offers the opportunity to test diatom response across two glacial-interglacial transitions and within the Last Glacial, while setting up taxonomic protocols for future research. The results are outstanding in demonstrating the sensitivity of diatoms to climate change, providing proxy evidence for temperature change marked by glacial-interglacial shifts between the dominant planktonic taxa, <i>Cyclotella fottii</i> and <i>C. ocellata</i>, and exact correlation with geochemical proxies to mark the start of the Last Interglacial at ca. 130 ka. Importantly, diatoms show much stronger evidence in this site for warming during MIS3 than recorded in other productivity-related proxies, peaking at ca. 39 ka, prior to the extreme conditions of the Last Glacial maximum. In the light of the observed patterns, and from the results of analysis of early Holocene sediments from a second core, Lz1120, the lack of a response to Late Glacial and early Holocene warming from ca. 15–7.4 ka suggests the Co1202 sequence may be compromised during this phase. After ca. 7.4 ka, there is evidence for enhanced nutrient enrichment compared to the Last Interglacial, following by a post-Medieval cooling trend. Taxonomically, morphological variability in <i>C. fottii</i> shows no clear trends linked to climate, but an intriguing change in central area morphology occurs after ca. 48.7 ka, coincident with a tephra layer. In contrast, <i>C. ocellata</i> shows morphological variation in the number of ocelli between interglacials, suggesting climatically-forced variation or evolutionary selection pressure. The application of a simple dissolution index does not track preservation quality very effectively, underlining the importance of diatom concentration data in future studies

Abstract. In order to understand the panarchy and interactions since the last interglacial period in the oldest, most diverse and hydrologically connected European lake system, we assess changes in the diatom record and selected geochemistry data from Lake Ohrid's "DEEP site" core and compare it with the diatom and multi-proxy data from Lake Prespa core Co1215. Driven by climate forcing, tephra impact and/or human influence, the lakes experienced two adaptive cycles during the last 92 ka: "interglacial and interstadial-regime" and "glacial-regime". The patterns of regime shifts appear synchronous in both lakes, while differences occur in the inferred amplitudes of the variations. The deeper Lake Ohrid shifted between ultraoligo- and oligotrophic regimes in contrast to the more shallow Lake Prespa, which shifts from (oligo-) mesotrophic to eutrophic conditions. In response to external forcing, Lake Ohrid exhibits a high capacity to buffer disturbances, whereas Lake Prespa is much more resilient and "recovers" in relatively short time. This decoupling of the response is evident during the MIS 5/4 and 2/1 transitions, when Lake Ohrid displays prolonged and gradual changes. The lakes' specific differences in the response and feedback mechanisms and their different physical and chemical properties, probably confine a direct influence of Lake Prespa's shallow/eutrophic regimes over the productivity regimes of Lake Ohrid. Regime shifts of Lake Ohrid due to the hydrological connectivity with Lake Prespa are not evident in the data presented here. Moreover, complete ecological collapse did not happened in both lakes for the period presented in the study.

Abstract. Ancient lakes, like lakes Ohrid and Prespa on the Balkan Peninsula, have become model systems for studying the link between geological and biotic evolution. Recently the scientific deep drilling program "Scientific Collaboration on Past Speciation Conditions in Lake Ohrid" (SCOPSCO) has been launched to better understand the environmental, climatic and limnological evolution of the lake. It revealed that Lake Ohrid experienced a number of environmental disturbances during its ca. 2.0 million year long history. They comprise disturbances that lasted over longer periods of times ("press events") such as Heinrich events as well as sudden and short disturbances ("pulse events") like the deposition of volcanic ashes. The latter include one of the most severe volcanic episodes during the Late Pleistocene, the eruption of the Campanian Ignimbrite (known as Y-5 marine tephra layer) from the Campi Flegrei caldera, dated at 39.6 ± 0.1 ka ago. The event is recorded by the deposition of a ca. 15 cm thick Y-5 tephra layer in sediment cores of lakes Ohrid (DEEP-5045-1) and Prespa (Co1204). This pulse event is overlain by the Heinrich event 4 (H4), 40.0–38.0 ka ago. In the current paper, diatoms were used as proxies to compare the responses of these lakes to the Y-5 (pulse) and the H4 (press) disturbances. Based on stratigraphically constrained incremental sum of squares cluster (CONISS) and unconstrained Partitioning Around Medoids (PAM) analyses, we found only little evidence that the diatom community compositions in either lake responded to the H4 event. However, the Y-5 influx caused clear and rapid diatom community changes. After the initial response, community composition in Lake Ohrid and, to a lesser extent, in Lake Prespa slowly returned to their quasi pre-disturbance state. Moreover, there is no evidence for disturbance-related extinction events. The combined evidence from these findings suggests that lakes Ohrid and Prespa likely did not experience regime shifts. It is therefore concluded that both lakes show resilience to environmental disturbance. However, it seems that Lake Ohrid is more resilient than Lake Prespa as the recovery of diatom communities is more pronounced and as its estimated recovery time is only ca. 1400 years vs. ca. 3600 years in Lake Prespa. The reasons for the differential responses remain largely unknown, but differences in geology, lake age, limnology, and intrinsic parameters of the diatom proxies may play a role. Given the relative robust results obtained, this study provides important new insights into the response of lakes to (multiple) environmental disturbances. Moreover, it contributes to one of the major goals of the SCOPSCO project – to evaluate the influence of major geological events onto the evolution of endemic taxa in Lake Ohrid.

Four species of Achnanthes sensu stricto have been observed in several subaerial habitats/localities in Macedonia. The morphological features of all recorded species have been described based on light and scanning electron microscope observations. Two species posses similar morphological features as already described species and were identified as A. coarctata (BréBisson ex W. smiTh) GrunoW and A. sinaensis (husTedT) stat. nov. Two species have unique set of characters that separate them from the known species and are described in this study as A. pseudocoarctata levkov et Tofilovska sp. nov. and A. prominula levkov et Tofilovska sp. nov. All recorded species were compared with the type populations including A. coarctata, A. coarctata var. sinaensis husTedT, and A. intermedia küTzinG. Observations of the syntype populations of A. coarctata give precise frame of the morphological variability of the species. Achnanthes pseudocoarctata appears similar to A. coarctata, but can be easily differentiated by the morphological and ultrastructural features of the rapheless valve. Achnanthes coarctata var. sinaensis has distinct morphological characters that make clear separation from A. coarctata, and therefore we propose a new status of this taxon with raising its rank to a species level. Achnanthes prominula appears similar to A. intermedia, but from latter can be easily separated by the position of the rapheless sternum. From other species with lanceolate or elliptic-lanceolate valves, A. prominula can be differentiated by the valve shape, position of the rapheless sternum, central area, stria and areola density.