EMP(Electromagnetic Pulse) protection facility was evaluated according to standard of shielding effectiveness. To comply with the standard, transmitting antenna was placed on outside of protection facility and receiving antenna was placed on inside of protection facility. However, measurement is impossible that place does not have enough space between protection facility and external concrete structure. In this paper, we performed a various of tests that put transmitting antenna inside the EMP protection facility in order to find out test method for measuring the shielding effectiveness of electromagnetic wave. Transmitting antenna was placed on inside of the EMP protection facility for measuring the shielding effectiveness to compare and analyze the impact of the position regarding to the transmitting and receiving antenna. As a result of test, in case that transmitting antenna was placed on inside of the EMP protection facility, it was found that test frequency range 10 kHz～1 GHz were occurred overall average difference of ±4 dB level.