Background
The metabolic enzyme nicotinamideâNâmethyltransferase (NNMT) is highly expressed in various cancer entities, suggesting tumourâpromoting functions. We systematically investigated NNMT expression and its metabolic interactions in clear cell renal cell carcinoma (ccRCC), a prominent RCC subtype with metabolic alterations, to elucidate its role as a drug target.
Methods
NNMT expression was assessed in primary ccRCC (n = 134), nonâtumour tissue and ccRCCâderived metastases (n = 145) by microarray analysis and/or immunohistochemistry. Findings were validated in The Cancer Genome Atlas (kidney renal clear cell carcinoma [KIRC], n = 452) and by singleâcell analysis. Expression was correlated with clinicopathological data and survival. Metabolic alterations in NNMTâdepleted cells were assessed by nontargeted/targeted metabolomics and extracellular flux analysis. The NNMT inhibitor (NNMTi) alone and in combination with the inhibitor 2âdeoxyâDâglucose for glycolysis and BPTES (bisâ2â(5âphenylacetamidoâ1,3,4âthiadiazolâ2âyl)ethylâsulfide) for glutamine metabolism was investigated in RCC cell lines (786âO, A498) and in two 2D ccRCCâderived primary cultures and three 3D ccRCC airâliquid interface models.
Results
NNMT protein was overexpressed in primary ccRCC (p = 1.32 Ă 10â16) and ccRCCâderived metastases (p = 3.92 Ă 10â20), irrespective of metastatic location, versus nonâtumour tissue. Singleâcell data showed predominant NNMT expression in ccRCC and not in the tumour microenvironment. High NNMT expression in primary ccRCC correlated with worse survival in independent cohorts (primary RCCâhazard ratio [HR] = 4.3, 95% confidence interval [CI]: 1.5â12.4; KIRCâHR = 3.3, 95% CI: 2.0â5.4). NNMT depletion leads to intracellular glutamine accumulation, with negative effects on mitochondrial function and cell survival, while not affecting glycolysis or glutathione metabolism. At the gene level, NNMTâdepleted cells upregulate glycolysis, oxidative phosphorylation and apoptosis pathways. NNMTi alone or in combination with 2âdeoxyâDâglucose and BPTES resulted in inhibition of cell viability in ccRCC cell lines and primary tumour and metastasisâderived models. In two out of three patientâderived ccRCC airâliquid interface models, NNMTi treatment induced cytotoxicity.
Conclusions
Since efficient glutamine utilisation, which is essential for ccRCC tumours, depends on NNMT, smallâmolecule NNMT inhibitors provide a novel therapeutic strategy for ccRCC and act as sensitizers for combination therapies.