Diamonds from the Rio Sorriso placer in the Juina area, Mato Grosso State, Brazil, contain mineral inclusions of ferropericlase associated with MgSiO3, CaSiO3, magnesite, merrillite, and other minerals. The ferropericlase inclusions in Rio Sorriso diamonds are resolved into two distinct genetic and compositional groups: (1) protogenetic, high-Ni and low-Fe (Ni = 8270–10,660 ppm; mg# = 0.756–0.842) ferropericlases, and (2) syngenetic, low-Ni and high-Fe (Ni = 600–3050 ppm; mg# = 0.477–0.718) ferropericlases. Based on the crystallographic orientation relationships between natural ferropericlase inclusions and host diamonds, high-Ni and low-Fe ferropericlases originate in the upper part of the lower mantle, while low-Ni and high-Fe ferropericlases, most likely, originate in the lithosphere. Mineral inclusions form the ultramafic lower-mantle (MgSiO3, which we suggest as bridgmanite, CaSiO3, which we suggest as CaSi-perovskite, and high-Ni and low-Fe ferropericlase) and lithospheric (CaSiO3, which we suggest as breyite, Ca(Si,Ti)O3, and low-Ni and high-Fe ferropericlase) associations. The presence of magnesite and merrillite inclusions in association with ferropericlase confirmed the existence of a deep-seated carbonatitic association. Diamonds hosting high-Ni and low-Ni ferropericlase have different carbon-isotopic compositions (δ13C = −5.52 ± 0.75‰ versus −7.07 ± 1.23‰ VPDB, respectively). It implies the carbon-isotopic stratification of the mantle: in the lower mantle, the carbon-isotopic composition tends to become isotopically heavier (less depleted in 13C) than in lithospheric diamonds. These regularities may characterize deep-seated diamonds and ferropericlases not only in the Juina area of Brazil but also in other parts of the world.